Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00010 ATGGAAGCAGTTTACAGGTTGAAACCCCTTTTGCCTTGTGTTGAGGATGTGCTTAGAGTTGGGAACGCTGCCGTTACTACTACTTCTGATATGCGTCTAGGAACAACAGCTAATTGTTACCTGCAGCTAGAAGCACCTGAACCCAACGTAACCGAGTTAGATATGACGGATCGGATGGTCAAGATCCAGATCGCCGATCACCCTCTTTATCCAGATTTACTCTCTGCATACATAGAATGCCGAAAGGTCGGAGCGCCGCCGGAACTGGCGTGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGTTCGCCGTGAGAAAGGGGACGGTTCTGAACTTGACCAGTTCATGGAAACGTACTGCGAAGTGCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAAGCGACTTTGTTTTTGGGAAACATGGAATCACAACTGAGCAACCTTTGTAATGGAACACTGATAAAGTCACCCGATAACAACCGCTCCGGTGGTGGGGCATCAGAGGAAGAATTAAGTTGTGGAGAGATGGAAGAAGTTGAAGGTCGTATATCTTCTTCTTTAAGTTGCCCAGGTGATCAAAATCTCAAGGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCACTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATTCAAAGATGGCACTCATGGACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAGTGACTGGACTGGACCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAACTGAGGACATGCGATTTGCCGTCATGGATGGGTTAAGTGGTGTTGGTGGAGGAGCTATGTTCATTTAG 918 0.4597 MEAVYRLKPLLPCVEDVLRVGNAAVTTTSDMRLGTTANCYLQLEAPEPNVTELDMTDRMVKIQIADHPLYPDLLSAYIECRKVGAPPELACLLEEIGRESHRMNVRREKGDGSELDQFMETYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNGTLIKSPDNNRSGGGASEEELSCGEMEEVEGRISSSLSCPGDQNLKEMLLRKYSGHFSTLRKEFLKRRKKGKLPKDSKMALMDWWNTHHRWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGLSGVGGGAMFI 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00010 305 SMART HOX_1 222 287 IPR001356 GO:0003677
Vium4717g00010 305 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Vium4717g00010 305 Pfam ELK domain 201 221 IPR005539 GO:0003677
Vium4717g00010 305 SMART ELK_2 200 221 IPR005539 GO:0003677
Vium4717g00010 305 SUPERFAMILY Homeodomain-like 222 294 IPR009057 -
Vium4717g00010 305 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Vium4717g00010 305 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Vium4717g00010 305 Gene3D - 218 291 - -
Vium4717g00010 305 Pfam KNOX2 domain 110 155 IPR005541 GO:0003677|GO:0005634
Vium4717g00010 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 290 - -
Vium4717g00010 305 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Vium4717g00010 305 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Vium4717g00010 305 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Vium4717g00010 305 CDD homeodomain 223 283 IPR001356 GO:0003677
Vium4717g00010 305 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00010 Vium-Chr4717 100613 105386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00010 45 297 Homeobox Transcription Factor Family AT1G23380 53.077 1.22e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium4717g00010 KNOX2 7.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00010 - - gmx:100814830 491.115