Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00009 ATGGAAGCAGTTTACAGGTTGAAACCCCTTTTGCCTTGTGTTGAGGATGTGCTTAGAGTTGGGAACGCTGCCGTTACTACTACTTCTGATATGCGTCTAGGAACAACAGCTAATTGTTACCTGCAGCTAGAAGCACCTGAACCCAACGTAACCGAGTTAGATATGACGGATCGGATGGTCAAGATCCAGATCGCCGATCACCCTCTTTATCCAGATTTACTCTCTGCATACATAGAATGCCGAAAGGTCGGAGCGCCGCCGGAACTGGCGTGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGTTCGCCGTGAGAAAGGGGACGGTTCTGAACTTGACCAGTTCATGGAAACGTACTGCGAAGTGCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAAGCGACTTTGTTTTTGGGAAACATGGAATCACAACTGAGCAACCTTTGTAATGGAACACTGATAAAGTCACCCGATAACAACCGCTCCGTAGGTGGTGGGGCATCAGAGGAAGAATTAAGTTGTGGAGAGATGGAAGAAGTTGAAGGTCGTATATCTTCTTCTTTAAGTTGCCCAGGTGATCAAAATCTCAAGGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCACTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATTCAAAGATGGCACTCATGGACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAGTGACTGGACTGGACCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAACTGAGGACATGCGATTTGCCGTCATGGATGGGTTAAGTGGTGTTGGTGGAGGAGCTATGTTCATTTAG 921 0.4593 MEAVYRLKPLLPCVEDVLRVGNAAVTTTSDMRLGTTANCYLQLEAPEPNVTELDMTDRMVKIQIADHPLYPDLLSAYIECRKVGAPPELACLLEEIGRESHRMNVRREKGDGSELDQFMETYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNGTLIKSPDNNRSVGGGASEEELSCGEMEEVEGRISSSLSCPGDQNLKEMLLRKYSGHFSTLRKEFLKRRKKGKLPKDSKMALMDWWNTHHRWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGLSGVGGGAMFI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00009 306 SMART ELK_2 201 222 IPR005539 GO:0003677
Vium4717g00009 306 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 291 - -
Vium4717g00009 306 SMART HOX_1 223 288 IPR001356 GO:0003677
Vium4717g00009 306 CDD homeodomain 224 284 IPR001356 GO:0003677
Vium4717g00009 306 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Vium4717g00009 306 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Vium4717g00009 306 Pfam KNOX2 domain 110 155 IPR005541 GO:0003677|GO:0005634
Vium4717g00009 306 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Vium4717g00009 306 SUPERFAMILY Homeodomain-like 223 295 IPR009057 -
Vium4717g00009 306 Gene3D - 219 292 - -
Vium4717g00009 306 Pfam ELK domain 202 222 IPR005539 GO:0003677
Vium4717g00009 306 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Vium4717g00009 306 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Vium4717g00009 306 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Vium4717g00009 306 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00009 Vium-Chr4717 100610 105386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00009 45 298 Homeobox Transcription Factor Family AT1G23380 52.652 4.01e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium4717g00009 KNOX2 7.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00009 - - gmx:100814830 493.426