Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00008 ATGGAAGCAGTTTACAGGTTGAAACCCCTTTTGCCTTGTGTTGAGGATGTGCTTAGAGTTGGGAACGCTGCCGTTACTACTACTTCTGATATGCGTCTAGGAACAACAGCTAATTGTTACCTGCAGCTAGAAGCACCTGAACCCAACGTAACCGAGTTAGATATGACGGATCGGATGGTCAAGATCCAGATCGCCGATCACCCTCTTTATCCAGATTTACTCTCTGCATACATAGAATGCCGAAAGGTCGGAGCGCCGCCGGAACTGGCGTGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGTTCGCCGTGAGAAAGGGGACGGTTCTGAACTTGACCAGTTCATGGAAACGTACTGCGAAGTGCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAAGCGACTTTGTTTTTGGGAAACATGGAATCACAACTGAGCAACCTTTGTAATGGAACACTGATAAAGTCACCCGATAACAACCGCTCCGTAGGTGGTGGGGCATCAGAGGAAGAATTAAGTTGTGGAGAGATGGAAGAAGTTGAAGGTCGTATATCTTCTTCTTTAAGTTGCCCAGGTGATCAAAATCTCAAGGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCACTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATTCAAAGATGGCACTCATGGACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGTAATTTCCATCATCTTCTTATCTTTTATGATACGCTGCTTGCTTCAGAAAACGGGATGGAATGATTTTGGGGAATTGGATAGTAGCCTTTTTCAGTACTTGTTCATCTGA 867 0.4521 MEAVYRLKPLLPCVEDVLRVGNAAVTTTSDMRLGTTANCYLQLEAPEPNVTELDMTDRMVKIQIADHPLYPDLLSAYIECRKVGAPPELACLLEEIGRESHRMNVRREKGDGSELDQFMETYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNGTLIKSPDNNRSVGGGASEEELSCGEMEEVEGRISSSLSCPGDQNLKEMLLRKYSGHFSTLRKEFLKRRKKGKLPKDSKMALMDWWNTHHRWPYPTVISIIFLSFMIRCLLQKTGWNDFGELDSSLFQYLFI 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00008 288 SMART ELK_2 201 222 IPR005539 GO:0003677
Vium4717g00008 288 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Vium4717g00008 288 Pfam ELK domain 202 222 IPR005539 GO:0003677
Vium4717g00008 288 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 51 156 - -
Vium4717g00008 288 Gene3D - 202 271 - -
Vium4717g00008 288 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Vium4717g00008 288 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Vium4717g00008 288 Pfam KNOX2 domain 110 155 IPR005541 GO:0003677|GO:0005634
Vium4717g00008 288 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00008 Vium-Chr4717 100606 104523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00008 45 252 Homeobox Transcription Factor Family AT1G23380 48.624 1.72e-55 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00008 - - gmx:100814830 405.601