Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00005 ATGGCGTCTTTCCACCCCAACCTCCATTCTGTTACGTCATCGCAACAATCCAATCACAAGAAGCGCCGCAAACACCACGCTTCCCTCGCTTCCGCTCCCTCTCCATGGACTTCCCAAACCGAACACCGCATCTACGCCACTAACCTCCTCCACGCGCTCCGCCGTAACAGCCCTGCCGCTGCCAGCGATGTCCGCGCAGCCGCCGACCGTGCCCTCGCCGCCACGGCCAAAGGCCGAACTCGCTGGAGCCGCGCGATTCTCACAAATCCGTTTGGCCGGTGGAAGGGGAGGCACCACATGAAGGCCAGGAAGTCCCGCGCTGGACTGATGAAGAAGAGGACGCCGGAGATTCGGAGAACGGCCCCGCCGCTGCAGAAGAAAGCGCGCTCCCTCGGACGGTTAATCCCCGGTTGCCGGAAGGTGTCGTTCCCGAAGCTTCTAGAAGAAGCCGGTGATTATATCTCTGCCTTGGAGATGCAAGTGCGAGCCATGACGGCTCTCGCCGACCTTCTCGCCGGCGGTCCGTCGTCCCCCGCTCCTCTCCGTTTGAGTTGA 555 0.6216 MASFHPNLHSVTSSQQSNHKKRRKHHASLASAPSPWTSQTEHRIYATNLLHALRRNSPAAASDVRAAADRALAATAKGRTRWSRAILTNPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRKVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSSPAPLRLS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00005 184 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 38 171 IPR044660 GO:0006355
Vium4717g00005 184 MobiDBLite consensus disorder prediction 1 15 - -
Vium4717g00005 184 MobiDBLite consensus disorder prediction 1 38 - -
Vium4717g00005 184 CDD bHLH_AtIBH1_like 118 168 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00005 Vium-Chr4717 32444 33383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00005 36 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 40.884 7.82e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00005 - - gmx:100813766 219.55