Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4714g00014 | ATGGTTAACCCTACGCGGCTTCGAATTTTCCGATTGCGTTCAATGCGCGGTGTTTATCCGGGACCCAGAAAACCTAGGTGCCTAGGGCTCTTCCAATCTTTCGTGGGTTTTGCACAAAATTCGAATTTTTTTATTCTCTGCGAAGTGGGCATGGTGGGGAACGACGACGCGGGTCACCTCTCCGCCTCCCGGAAAATGTTCTGGCGGTCGGCGTCGTGGTCATCTTCCCGTACCGCCGCCGGGAACGCCTCTTCCGGCGAGGCGGGTAAGGGTTTCGCGGATTCTGGCAGCGCAGAAGGTCCTCACAGAGAGAACCGGCGGTTCCCTCCGCCGCCACTCACGCCTCGGTCGCAGCAGAATTGTAAGGCGCGGTCTTGCTTGCCGCCGCTGCAGCCGCTGTCTATCGCTCGGCGGAGTCTTGATGAGTGGCCGAAGGCGGGCTCCGACGACATCGGCGAGTGGCCGCAGCCGCCCACCACCCCTGGAGGGAGAGGTAATGGTAGCAATGGTGAAAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAGCAACCCTGATCATAGTAGGAGTAACAATGGTGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGACAAGGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAGGGATAGGGACATTTTGAAGCATAATGGTATCACTCATGTGTTGAATTGTGTGGGGTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTGTATAGGACTTTGTGGCTGCAGGATAGTCCCTCCGAGGACATTACTAGTATCTTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAACAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTCGGTCTACATCTCTGGTGATTGCTTACCTTATGTGGAGGGAGGGACAAAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCTGCAAGAGGGATTGCTGATCCGAATATGGGGTTCGCTTGCCAGTTGTTGCAGTGTCAGAAAAGGGTCCACGCGTTCCCTCTTAGTCCTAGCTCTTTGCTGAGGATTTACAGGATTGCTCCACACTCCCCGTATGATCCTTTACATCTTGTTCCCAAAATGTTGATGGATCCTTCGTCAGCTGCATTGGACTCCAGAGGCGCGTTTATTGTGCACATTCCTTCGGCAATATATGTTTGGATTGGTAAGAACTGTGAGGCCATCATGGAGAGGGACGCCAGAGGGGCTGTTGGCCAGATTGTTCGGTATGAGAAGGTGCAAGGGCCAATTGTGATGATTAAGGAAGGCGAGGAACCGGCTTACTTCTGGGATGCTTTTTCGAATTTTCTGCCTTTGATGGACAAATCTGGCAATAGAGTAGAAGATGGAAACTTAACTAGTAAAGTTTCTCCTGGTGAGAGGAGAGTGGAAGCATATGATGTTGATTATGAAGTTTTCAAAAAAGCAATCACAGGAGGATTTGTGCCTCCCTTTGCGTCATCTGAGAATGAACATGAAACCCATCTGCCTGCAAGAGAGAGTAGTTGGAGTGCTTTAAGGCGTAAAGTTGCCTCTGCTAATATGAAGGAGTTTGTTTCCACCCCTAGGTTATCCTTTCCCAGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAACTTGTCTCCATCCTCATCCCTTTCATCATCGTCATCGTCTATATCATCATCCTCTTCACCGTCTTATGTTTCTCCAGATTCCTTTTCTTCTGATTCTAGCACTCATTCTAAGTTTTTGTCTGAAGTATCCCCAGATTCTTCCTCTGTGGTTTTTACCCCTATCCCCGTATCTTCTTCTTTGTCTAGTTTTTCTAATTTGTCAATCTCTTCAAATTCTACTTCTAAAGCAGTTTCTAACAGTACAGATATCCTTGGTGTCAAGTTATCACATCCCTGGTCTCAGTCAGCCTCTTTACCATTGAAGAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGTCTGTCAAAATCTTTGAAGTTGCCACTGAAGAATGATAAGAAACAAGTAATGGATGAGCCACCTACCTTTCATAACAGTCAAGAATATGACATTGTTGTTAATGGCAATGTTAGCTATTTGCAACAATCAGACAGTAAAGATTATTTTTGTGAGTCTAACAAGCATGCCAAGGAGGGAGTGCTGAATTCATTTCAAAAGTGTGAGCTAGCACTATCTCCAAGCATTGTTGACCGCACGCACCTCAAGGAATCATCACTTGTTCGGAACTCTGTTGAGCCTTTGATAGATAGTTCCTCAGTAGAAGACGCAGTGCTTGGTCAGTCTGCAGCATTGAAGGGAGCCAATGAGAGTGGCTTGGCGCAGTTTAATGTCGCACAGACTTCGGTATATCACTGGCCCAGTTTAGAAAAGGTTGAGACATTTGGTACAGATCATTTGGATTCTAAAGCTGCTTTTGTCATATTCTCTCCCAGTATGCACTTACACGCAGGGAACATGCTATATATTTGGGTAGGGAAGTCTTTCAATTGTGACGCTTCACAGGTTCACTTGGATGTTGATATACAGTTAGATTGTTTAGGAGCTGTTGACTGGAATCAAATTGGATGTGATCTCCTTGATCGGTTTAGTTTGCCGAAGAGTACAGCCATCAAGATTGTTAAAGAGAATGAGGAACCTTCAGAGTTCCTTGCTTTACTCAGGTCATTGTAG | 2727 | 0.4624 | MVNPTRLRIFRLRSMRGVYPGPRKPRCLGLFQSFVGFAQNSNFFILCEVGMVGNDDAGHLSASRKMFWRSASWSSSRTAAGNASSGEAGKGFADSGSAEGPHRENRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHSNPDHSRSNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRIYRIAPHSPYDPLHLVPKMLMDPSSAALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYEKVQGPIVMIKEGEEPAYFWDAFSNFLPLMDKSGNRVEDGNLTSKVSPGERRVEAYDVDYEVFKKAITGGFVPPFASSENEHETHLPARESSWSALRRKVASANMKEFVSTPRLSFPRVYSDSMLCIHTSANLSPSSSLSSSSSSISSSSSPSYVSPDSFSSDSSTHSKFLSEVSPDSSSVVFTPIPVSSSLSSFSNLSISSNSTSKAVSNSTDILGVKLSHPWSQSASLPLKKPSTSLAERRGSLSKSLKLPLKNDKKQVMDEPPTFHNSQEYDIVVNGNVSYLQQSDSKDYFCESNKHAKEGVLNSFQKCELALSPSIVDRTHLKESSLVRNSVEPLIDSSSVEDAVLGQSAALKGANESGLAQFNVAQTSVYHWPSLEKVETFGTDHLDSKAAFVIFSPSMHLHAGNMLYIWVGKSFNCDASQVHLDVDIQLDCLGAVDWNQIGCDLLDRFSLPKSTAIKIVKENEEPSEFLALLRSL | 908 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4714g00014 | 908 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 201 | 348 | IPR029021 | - | |
Vium4714g00014 | 908 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 207 | 349 | IPR020422 | GO:0006470|GO:0008138 | |
Vium4714g00014 | 908 | Pfam | Dual specificity phosphatase, catalytic domain | 215 | 345 | IPR000340 | GO:0008138|GO:0016311 | |
Vium4714g00014 | 908 | SMART | dsp_5 | 207 | 346 | IPR020422 | GO:0006470|GO:0008138 | |
Vium4714g00014 | 908 | MobiDBLite | consensus disorder prediction | 144 | 172 | - | - | |
Vium4714g00014 | 908 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 266 | 327 | IPR000387 | GO:0016311|GO:0016791 | |
Vium4714g00014 | 908 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 291 | 301 | IPR016130 | GO:0016311|GO:0016791 | |
Vium4714g00014 | 908 | Gene3D | Severin | 370 | 454 | IPR029006 | - | |
Vium4714g00014 | 908 | MobiDBLite | consensus disorder prediction | 560 | 580 | - | - | |
Vium4714g00014 | 908 | Gene3D | Protein tyrosine phosphatase superfamily | 183 | 349 | IPR029021 | - | |
Vium4714g00014 | 908 | MobiDBLite | consensus disorder prediction | 653 | 671 | - | - | |
Vium4714g00014 | 908 | CDD | DSP | 208 | 342 | - | - | |
Vium4714g00014 | 908 | SUPERFAMILY | Actin depolymerizing proteins | 356 | 461 | - | - | |
Vium4714g00014 | 908 | MobiDBLite | consensus disorder prediction | 78 | 125 | - | - | |
Vium4714g00014 | 908 | PANTHER | MKPA PROTEIN | 61 | 905 | - | - | |
Vium4714g00014 | 908 | SUPERFAMILY | Actin depolymerizing proteins | 810 | 906 | - | - | |
Vium4714g00014 | 908 | MobiDBLite | consensus disorder prediction | 653 | 672 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4714g00014 | Vium-Chr4714 | 95071 | 99534 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4714g00014 | 52 | 243 | Protein tyrosine phosphatase (PTP) family | AT3G55270 | 62.500 | 7.50e-66 | 234 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4714g00014 | - | - | vum:124838930 | 1731.07 |