Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4714g00013 ATGGTTAACCCTACGCGGCTTCGAATTTTCCGATTGCGTTCAATGCGCGGTGTTTATCCGGGACCCAGAAAACCTAGGTGCCTAGGGCTCTTCCAATCTTTCGTGGGTTTTGCACAAAATTCGAATTTTTTTATTCTCTGCGAAGTGGGCATGGTGGGGAACGACGACGCGGGTCACCTCTCCGCCTCCCGGAAAATGTTCTGGCGGTCGGCGTCGTGGTCATCTTCCCGTACCGCCGCCGGGAACGCCTCTTCCGGCGAGGCGGGTAAGGGTTTCGCGGATTCTGGCAGCGCAGAAGGTCCTCACAGAGAGAACCGGCGGTTCCCTCCGCCGCCACTCACGCCTCGGTCGCAGCAGAATTGTAAGGCGCGGTCTTGCTTGCCGCCGCTGCAGCCGCTGTCTATCGCTCGGCGGAGTCTTGATGAGTGGCCGAAGGCGGGCTCCGACGACATCGGCGAGTGGCCGCAGCCGCCCACCACCCCTGGAGGGAGAGGTAATGGTAGCAATGGTGAAAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAGCAACCCTGATCATAGTAGGAGTAACAATGGTGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGACAAGGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAGGGATAGGGACATTTTGAAGCATAATGGTATCACTCATGTGTTGAATTGTGTGGGGTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTGTATAGGACTTTGTGGCTGCAGGATAGTCCCTCCGAGGACATTACTAGTATCTTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAACAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTCGGTCTACATCTCTGGTGATTGCTTACCTTATGTGGAGGGAGGGACAAAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCTGCAAGAGGGATTGCTGATCCGAATATGGGGTTCGCTTGCCAGTTGTTGCAGTGTCAGAAAAGGGTCCACGCGTTCCCTCTTAGTCCTAGCTCTTTGCTGAGGATTTACAGGATTGCTCCACACTCCCCGTATGATCCTTTACATCTTGTTCCCAAAATGTTGATGGATCCTTCGTCAGCTGCATTGGACTCCAGAGGCGCGTTTATTGTGCACATTCCTTCGGCAATATATGTTTGGATTGGTAAGAACTGTGAGGCCATCATGGAGAGGGACGCCAGAGGGGCTGTTGGCCAGATTGTTCGGTATGAGAAGGTGCAAGGGCCAATTGTGATGATTAAGGAAGGCGAGGAACCGGCTTACTTCTGGGATGCTTTTTCGAATTTTCTGCCTTTGATGGACAAATCTGGCAATAGAGTAGAAGATGGAAACTTAACTAGTAAAGTTTCTCCTGGTGAGAGGAGAGTGGAAGCATATGATGTTGATTATGAAGTTTTCAAAAAAGCAATCACAGGAGGATTTGTGCCTCCCTTTGCGTCATCTGAGAATGAACATGAAACCCATCTGCCTGCAAGAGAGAGTAGTTGGAGTGCTTTAAGGCGTAAAGTTGCCTCTGCTAATATGAAGGAGTTTGTTTCCACCCCTAGGTTATCCTTTCCCAGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAACTTGTCTCCATCCTCATCCCTTTCATCATCGTCATCGTCTATATCATCATCCTCTTCACCGTCTTATGTTTCTCCAGATTCCTTTTCTTCTGATTCTAGCACTCATTCTAAGTTTTTGTCTGAAGTATCCCCAGATTCTTCCTCTGTGGTTTTTACCCCTATCCCCGTATCTTCTTCTTTGTCTAGTTTTTCTAATTTGTCAATCTCTTCAAATTCTACTTCTAAAGCAGTTTCTAACAGTACAGATATCCTTGGTGTCAAGTTATCACATCCCTGGTCTCAGTCAGCCTCTTTACCATTGAAGAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGTCTGTCAAAATCTTTGAAGTTGCCACTGAAGAATGATAAGAAACAAGTAATGGATGAGCCACCTACCTTTCATAACAGTCAAGAATATGACATTGTTGTTAATGGCAATGTTAGCTATTTGCAACAATCAGACAGTAAAGATTATTTTTGTGAGTCTAACAAGCATGCCAAGGAGGGAGTGCTGAATTCATTTCAAAAGTGTGAGCTAGCACTATCTCCAAGCATTGTTGACCGCACGCACCTCAAGGAATCATCACTTGTTCGGAACTCTGTTGAGCCTTTGATAGATAGTTCCTCAGTAGAAGACGCAGTGCTTGGTCAGTCTGCAGCATTGAAGGGAGCCAATGAGAGTGGCTTGGCGCAGTTTAATGTCGCACAGACTTCGTATGCACTTACACGCAGGGAACATGCTATATATTTGGGTAGGGAAGTCTTTCAATTGTGA 2460 0.4687 MVNPTRLRIFRLRSMRGVYPGPRKPRCLGLFQSFVGFAQNSNFFILCEVGMVGNDDAGHLSASRKMFWRSASWSSSRTAAGNASSGEAGKGFADSGSAEGPHRENRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHSNPDHSRSNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRIYRIAPHSPYDPLHLVPKMLMDPSSAALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYEKVQGPIVMIKEGEEPAYFWDAFSNFLPLMDKSGNRVEDGNLTSKVSPGERRVEAYDVDYEVFKKAITGGFVPPFASSENEHETHLPARESSWSALRRKVASANMKEFVSTPRLSFPRVYSDSMLCIHTSANLSPSSSLSSSSSSISSSSSPSYVSPDSFSSDSSTHSKFLSEVSPDSSSVVFTPIPVSSSLSSFSNLSISSNSTSKAVSNSTDILGVKLSHPWSQSASLPLKKPSTSLAERRGSLSKSLKLPLKNDKKQVMDEPPTFHNSQEYDIVVNGNVSYLQQSDSKDYFCESNKHAKEGVLNSFQKCELALSPSIVDRTHLKESSLVRNSVEPLIDSSSVEDAVLGQSAALKGANESGLAQFNVAQTSYALTRREHAIYLGREVFQL 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4714g00013 819 Pfam Dual specificity phosphatase, catalytic domain 215 345 IPR000340 GO:0008138|GO:0016311
Vium4714g00013 819 ProSiteProfiles Dual specificity protein phosphatase domain profile. 207 349 IPR020422 GO:0006470|GO:0008138
Vium4714g00013 819 SMART dsp_5 207 346 IPR020422 GO:0006470|GO:0008138
Vium4714g00013 819 MobiDBLite consensus disorder prediction 144 172 - -
Vium4714g00013 819 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 266 327 IPR000387 GO:0016311|GO:0016791
Vium4714g00013 819 ProSitePatterns Tyrosine specific protein phosphatases active site. 291 301 IPR016130 GO:0016311|GO:0016791
Vium4714g00013 819 Gene3D Severin 370 454 IPR029006 -
Vium4714g00013 819 MobiDBLite consensus disorder prediction 560 580 - -
Vium4714g00013 819 MobiDBLite consensus disorder prediction 653 671 - -
Vium4714g00013 819 CDD DSP 208 342 - -
Vium4714g00013 819 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 201 348 IPR029021 -
Vium4714g00013 819 PANTHER MKPA PROTEIN 61 695 - -
Vium4714g00013 819 SUPERFAMILY Actin depolymerizing proteins 356 461 - -
Vium4714g00013 819 MobiDBLite consensus disorder prediction 78 125 - -
Vium4714g00013 819 Gene3D Protein tyrosine phosphatase superfamily 182 349 IPR029021 -
Vium4714g00013 819 MobiDBLite consensus disorder prediction 653 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4714g00013 Vium-Chr4714 95071 99535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4714g00013 52 243 Protein tyrosine phosphatase (PTP) family AT3G55270 62.500 1.59e-66 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4714g00013 - - vum:124838930 1509.2