LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4714g00012	ATGGCTCCTACTAAGGTGGTCAATGCTAAAAAGGCTGATCCCAAAACTCAGGCCTTGAAGACGGCTAAGGCCGTCAAGTCTGGTGGCCAAGTGTTTAAGAAAACCAAAAAGATCAGGACATCAGTTACATTTCACCGGCCAAAGACATTGAAAAAGGACAGGAACCCTAAGTATCCTCGCATTAGTGCTCCGCCCAGAAACAAGTTGGACCATTATCAGATACTTAAATTTCCTTTAACTACCGAATCTGCAATGAAGAAAATCGAGGATAACAATACACTGGTTTTTATTGTTGATCTCCGTGCTGACAAAAAGAAGATTAAAGATGCTGTGAAGAAGATGTACGACATTCAGGCCAAGAAAGTAAACACATTAATCAGGCCAGACGGAACTAAGAAGGCCTATGTTAGGTTGACTGCAGATTATGATGCCTTGGATGTAGCCAACAAGATTGGTATAATCTAA	465	0.4129	MAPTKVVNAKKADPKTQALKTAKAVKSGGQVFKKTKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTADYDALDVANKIGII	154

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4714g00012	154	ProSitePatterns	Ribosomal protein L23 signature.	132	147	IPR001014	GO:0019843
	Vium4714g00012	154	PANTHER	60S RIBOSOMAL PROTEIN L23A	8	154	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vium4714g00012	154	Gene3D	-	35	154	IPR012677	-
	Vium4714g00012	154	NCBIfam	50S ribosomal protein L23	78	154	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Vium4714g00012	154	Pfam	Ribosomal protein L23, N-terminal domain	15	64	IPR005633	-
	Vium4714g00012	154	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	71	147	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Vium4714g00012	154	Pfam	Ribosomal protein L23	74	136	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vium4714g00012	154	Hamap	50S ribosomal protein L23 [rplW].	74	154	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vium4714g00012	154	FunFam	60S ribosomal protein L23a	34	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4714g00012	Vium-Chr4714	90274	93643	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4714g00012	1	154	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	84.416	1.96e-65	195

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4714g00012	K02893		-	gmx:100777933	281.182