LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4714g00011	ATGGCTCTTCCAAGACCAAGCAGTGAAGAGAAAGCCCTTTCTCAGCTCAAAGAAGGAACAGCATCATCAGCAGCAGCAGCACCACCTTCATCATCTTCTTCATGGAATAGGCTTCACACTTTCTCTCCTTTGAATCTACACAACAAGACTAGCAAAATTGAAGACAGTGATGAAGATATGTTCACAGTTCCAGATGTCGAGACCACACCCATTAATGTTCATTCTCATCCAAACAGTATCCTTAAACAATCTAACGTGACAGAACCTCAGTTTCAAACTGGTTTCCCTGGAAAGCGTCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGTCTCAAGAGGTTGTTGAGAAATAGGGTTTCTGCTCAACAAGCTCGAGAAAGAAAGAAGGTTTATGTGAATGATTTGGAAGCAAGAGCCAAAGAGTTGCAAGATAAAAATGCTATCTTAGATGAACGTATCTCTACTTTGATAAATGAGAACACCATGCTTAGAAAGGTTCTTATGAATGCGAGGCCAAAAGTTGATGATAGTAATGAACAAAAGCAAGAGCACTTAAGTAAGAGCTAA	573	0.4084	MALPRPSSEEKALSQLKEGTASSAAAAPPSSSSSWNRLHTFSPLNLHNKTSKIEDSDEDMFTVPDVETTPINVHSHPNSILKQSNVTEPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLEARAKELQDKNAILDERISTLINENTMLRKVLMNARPKVDDSNEQKQEHLSKS	190

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4714g00011	190	MobiDBLite	consensus disorder prediction	1	37	-	-
	Vium4714g00011	190	Coils	Coil	127	161	-	-
	Vium4714g00011	190	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	114	129	IPR004827	GO:0003700\|GO:0006355
	Vium4714g00011	190	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	109	172	IPR004827	GO:0003700\|GO:0006355
	Vium4714g00011	190	CDD	bZIP_HY5-like	121	162	-	-
	Vium4714g00011	190	SUPERFAMILY	Leucine zipper domain	111	170	IPR046347	GO:0003700\|GO:0006355
	Vium4714g00011	190	Gene3D	Single helix bin	130	171	-	-
	Vium4714g00011	190	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	19	187	IPR044280	GO:0000981\|GO:0045944
	Vium4714g00011	190	MobiDBLite	consensus disorder prediction	87	109	-	-
	Vium4714g00011	190	SMART	brlzneu	107	171	IPR004827	GO:0003700\|GO:0006355
	Vium4714g00011	190	FunFam	Transcription factor HY5	130	171	-	-
	Vium4714g00011	190	Pfam	bZIP transcription factor	108	167	IPR004827	GO:0003700\|GO:0006355
	Vium4714g00011	190	MobiDBLite	consensus disorder prediction	13	37	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4714g00011	Vium-Chr4714	80505	84594	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4714g00011	90	179	Basic region leucine zipper (bZIP) Transcription Factor Gene Family	AT3G17609	73.626	1.17e-40	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vium4714g00011		bZIP_1	4.4e-12	CL0018