Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4714g00011 ATGGCTCTTCCAAGACCAAGCAGTGAAGAGAAAGCCCTTTCTCAGCTCAAAGAAGGAACAGCATCATCAGCAGCAGCAGCACCACCTTCATCATCTTCTTCATGGAATAGGCTTCACACTTTCTCTCCTTTGAATCTACACAACAAGACTAGCAAAATTGAAGACAGTGATGAAGATATGTTCACAGTTCCAGATGTCGAGACCACACCCATTAATGTTCATTCTCATCCAAACAGTATCCTTAAACAATCTAACGTGACAGAACCTCAGTTTCAAACTGGTTTCCCTGGAAAGCGTCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGTCTCAAGAGGTTGTTGAGAAATAGGGTTTCTGCTCAACAAGCTCGAGAAAGAAAGAAGGTTTATGTGAATGATTTGGAAGCAAGAGCCAAAGAGTTGCAAGATAAAAATGCTATCTTAGATGAACGTATCTCTACTTTGATAAATGAGAACACCATGCTTAGAAAGGTTCTTATGAATGCGAGGCCAAAAGTTGATGATAGTAATGAACAAAAGCAAGAGCACTTAAGTAAGAGCTAA 573 0.4084 MALPRPSSEEKALSQLKEGTASSAAAAPPSSSSSWNRLHTFSPLNLHNKTSKIEDSDEDMFTVPDVETTPINVHSHPNSILKQSNVTEPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLEARAKELQDKNAILDERISTLINENTMLRKVLMNARPKVDDSNEQKQEHLSKS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4714g00011 190 MobiDBLite consensus disorder prediction 1 37 - -
Vium4714g00011 190 Coils Coil 127 161 - -
Vium4714g00011 190 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 114 129 IPR004827 GO:0003700|GO:0006355
Vium4714g00011 190 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 109 172 IPR004827 GO:0003700|GO:0006355
Vium4714g00011 190 CDD bZIP_HY5-like 121 162 - -
Vium4714g00011 190 SUPERFAMILY Leucine zipper domain 111 170 IPR046347 GO:0003700|GO:0006355
Vium4714g00011 190 Gene3D Single helix bin 130 171 - -
Vium4714g00011 190 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 19 187 IPR044280 GO:0000981|GO:0045944
Vium4714g00011 190 MobiDBLite consensus disorder prediction 87 109 - -
Vium4714g00011 190 SMART brlzneu 107 171 IPR004827 GO:0003700|GO:0006355
Vium4714g00011 190 FunFam Transcription factor HY5 130 171 - -
Vium4714g00011 190 Pfam bZIP transcription factor 108 167 IPR004827 GO:0003700|GO:0006355
Vium4714g00011 190 MobiDBLite consensus disorder prediction 13 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4714g00011 Vium-Chr4714 80505 84594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4714g00011 90 179 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 73.626 1.17e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium4714g00011 bZIP_1 4.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4714g00011 K16241 - gmx:778143 295.049