Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4714g00010 ATGGCTCTTCCAAGACCAAGCAGTGAAGAGAAAGCCCTTTCTCAGCTCAAAGAAGGAACAGCATCATCAGCAGCAGCAGCACCACCTTCATCATCTTCTTCATGGAATAGGCTTCACACTTTCTCTCCTTTGAATCTACACAACAAGACTAGCAAAATTGACAGTGATGAAGATATGTTCACAGTTCCAGATGTCGAGACCACACCCATTAATGTTCATTCTCATCCAAACAGTATCCTTAAACAATCTAACGTGACAGAACCTCAGTTTCAAACTGGTTTCCCTGGAAAGCGTCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGTCTCAAGAGGTTGTTGAGAAATAGGGTTTCTGCTCAACAAGCTCGAGAAAGAAAGAAGGTTTATGTGAATGATTTGGAAGCAAGAGCCAAAGAGTTGCAAGATAAAAATGCTATCTTAGATGAACGTATCTCTACTTTGATAAATGAGAACACCATGCTTAGAAAGGTTCTTATGAATGCGAGGCCAAAAGTTGATGATAGTAATGAACAAAAGCAAGAGCACTTAAGTAAGAGCTAA 570 0.4088 MALPRPSSEEKALSQLKEGTASSAAAAPPSSSSSWNRLHTFSPLNLHNKTSKIDSDEDMFTVPDVETTPINVHSHPNSILKQSNVTEPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLEARAKELQDKNAILDERISTLINENTMLRKVLMNARPKVDDSNEQKQEHLSKS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4714g00010 189 Pfam bZIP transcription factor 107 166 IPR004827 GO:0003700|GO:0006355
Vium4714g00010 189 Gene3D Single helix bin 129 170 - -
Vium4714g00010 189 MobiDBLite consensus disorder prediction 13 39 - -
Vium4714g00010 189 MobiDBLite consensus disorder prediction 1 39 - -
Vium4714g00010 189 FunFam Transcription factor HY5 129 170 - -
Vium4714g00010 189 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 108 171 IPR004827 GO:0003700|GO:0006355
Vium4714g00010 189 SUPERFAMILY Leucine zipper domain 110 169 IPR046347 GO:0003700|GO:0006355
Vium4714g00010 189 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 113 128 IPR004827 GO:0003700|GO:0006355
Vium4714g00010 189 Coils Coil 126 160 - -
Vium4714g00010 189 MobiDBLite consensus disorder prediction 84 108 - -
Vium4714g00010 189 SMART brlzneu 106 170 IPR004827 GO:0003700|GO:0006355
Vium4714g00010 189 CDD bZIP_HY5-like 120 161 - -
Vium4714g00010 189 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 19 186 IPR044280 GO:0000981|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4714g00010 Vium-Chr4714 80505 84595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4714g00010 89 178 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 73.626 1.16e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium4714g00010 bZIP_1 5e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4714g00010 K16241 - gmx:778143 288.5