Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4714g00009 ATGTTCACAGTTCCAGATGTCGAGACCACACCCATTAATGTTCATTCTCATCCAAACAGTATCCTTAAACAATCTAACGTGACAGAACCTCAGTTTCAAACTGGTTTCCCTGGAAAGCGTCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGTCTCAAGAGGTTGTTGAGAAATAGGGTTTCTGCTCAACAAGCTCGAGAAAGAAAGAAGGTTTATGTGAATGATTTGGAAGCAAGAGCCAAAGAGTTGCAAGATAAAAATGCTATCTTAGAAGAACGTATCTCTACTTTGATAAATGAGAACACCATGCTTAGAAAGGTTCTTATGAATGCGAGGCCAAAAGTTGATGATAGTAATGAACAAAAGCAAGAGCACTTAAGTAAGAGCTAA 396 0.3965 MFTVPDVETTPINVHSHPNSILKQSNVTEPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLEARAKELQDKNAILEERISTLINENTMLRKVLMNARPKVDDSNEQKQEHLSKS 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4714g00009 131 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 55 70 IPR004827 GO:0003700|GO:0006355
Vium4714g00009 131 Coils Coil 68 102 - -
Vium4714g00009 131 Pfam bZIP transcription factor 49 108 IPR004827 GO:0003700|GO:0006355
Vium4714g00009 131 CDD bZIP_HY5-like 62 103 - -
Vium4714g00009 131 SMART brlzneu 48 112 IPR004827 GO:0003700|GO:0006355
Vium4714g00009 131 MobiDBLite consensus disorder prediction 28 54 - -
Vium4714g00009 131 Gene3D Single helix bin 71 112 - -
Vium4714g00009 131 FunFam Transcription factor HY5 71 112 - -
Vium4714g00009 131 SUPERFAMILY Leucine zipper domain 52 111 IPR046347 GO:0003700|GO:0006355
Vium4714g00009 131 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 23 128 IPR044280 GO:0000981|GO:0045944
Vium4714g00009 131 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 50 113 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4714g00009 Vium-Chr4714 76156 78874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4714g00009 31 119 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 75.556 1.27e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium4714g00009 bZIP_1 2.6e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4714g00009 K16241 - gmx:778143 228.024