Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4714g00003 ATGGCGGATTCGATTGTTGTGTTTCTGATCGACAAATTGACGAGGTTGTTGGTGGAGGAAGCCAAACTTCTCACCGGCGTGCGCGACCAAGTTACGTCGTTGCAGAGCGAGCTCAGGTTCATGAATATCTTCCTCAGGAACTCCTCCAAAGGGAAGCGCAAAGAGCATGACATGGTCGCGGAGCTCGTCAGCCAGATCAGAGACGTCGCGCACGAGGCCGAAGACGTCATCGACACCTACGTCGCCTGCATCATCAAGCAAAGCCGGAGAAACGTGATCGGGAAAGTCGGTTTCCGCGGTGTGGACCACGCGCTCATGCTTCACCAGGTGGCTGTGAAGGTCGACGGGATCAAGGCCAGAATCAAAGAGATCTTCGACAACAAAGAGAGGTACGGCATCGATGACGGAAAGAGAGGCAGCGAAGAGGAAGCGGAGCGGATTCGGAGGCAGAGGAGGGAGGTGGAGGAGGAAGAGGTGGTAGGGTTTGCGCTGGACTCCAAGGTTGTGATTGAGAAACTCACGGTGTCGGATTCTCGTCTTAAAGTTGTTTCCGTCGTCGGTATGGGTGGTTTGGGAAAAACCACGCTTGCTCGAAAGGTATATAACTCTAACCGAGTGAAGAACATGTTTCCTTGTCGGGCGTGGGGTTATGTGTCTAATGATTATCGACCAAGGGAGTTTTTCTTGAGCCTGCTCAAGTGTTTGATGTCCACGTCCAAGTACAGTAATTTGTTCAAGAAAAGAGAAGAGACTAGTGTGAGTGATGAAGAGCTGAAGATGAAGGTGCGAGAATGCTTGAACAGAAGCAAGTACTTGGTGGTGGTGGACGATGTTTGGCAGAAACAGGTGTGGAATGAGGTTAAAGGGGCATTTCCTGATGATCAAAATGGAAGCAGGATATTGATGACTACTCGTTCGGCTGAGGTGGCTTCTCACGCTGGTCCTGTTCCTCCCTACGCTCTTCCTTTCCTCACCAAAGAAGAAAGCTGGGAGCTGCTTTCCAAGAAGGTGTTTAGAGGAGAAGATTGTCCTTGTGATTTAGAATCCCTGGGAAAATTGATCGCTGATAGCTGTGATGGGTTGCCACTTGCCCTTATTGTGATGGCAGGGATTTTGGCTAACAAGAAGTCACCGAGGGATTGGTCTAGAATCAAGGACCATGTGAATTGGCATCTTGGGAGGGACAACACACTGAAGGACATACTCAAACTCAGCTATGACTCCTTGCCCGCGAGGTTAAAGCCTTGCTTTCTGTATTTTGGCATGTACCCTGAAGATTATAGGATCCCCGTGAAGCAGTTAATCCAGTTATGGATATCCGAAGGATTATTAACACAAGAAACTTCTGGAGGCCAAGACATACCAGAGCCGGAATACATTGCGGAAGAGTACTTGGATGAACTGGTGGATCGAAGCTTGATCCAAGTGGTAAGTAGAACCAATGATGGGGGTGTCAAAACATGTCGGATTCACGATCTTCTTCGTGACCTTTGCATATCTGAGAGCAGGGAAGACAAGTTTTTCGAGGTTTGTGGAGAGATTGATATTCAAAACCTCAATAGTTGTCCCCGTAAGTTGTCTCTCCAGGGTACTCTTTTTCATTTCTCTTCGAGTATCGTATCTGATTACACCATCTCGGCGACGCGTTCCTTGTTATGCTTTGGGCAAGAGGTGTACAAGGTTAAGGCAAATCACTGGAGATGGCTTCTCAAGAGCTTCAGGTTGGCTCGCGTGTTGGATTTAGGACGAATGAATGTTAACTCAATACCCACTGATTTGGAGAAGCTCATTCATTTAAGGTACTTGAGAATACACTCTCATAATCTTGAAACTATTCCACCTTCTATATGCAGATTGTGGAATCTAGAAACCTTGGATTTAAGAGGTTCGCCTATAAAATCCTTTTCTGGTGAATTATGGCAACTTAAACAACTAAGGCATCTTCTGTTGTTTGGACCCGTTGGGCTCCCAGAAATGCCCTCAGAAAGTAAAACTATGCCCAATCTTCAAACCCTCTCAACCGTGGCTCTTGATCCTCGCACAGCATCGTTGTTGGATAGTCGTAGATTCCCAGGGATGACAAAATTGGGTATACATTACGAAAGACGTGACAAGTGCAATGCTAAAATACAGTTACAGAGTCTCCATCGCCTGAGCCATCTCCAGAAGCTGAAAGTGATAGGCACTACTGAGATTCCTCAAAATGCAAATGTGTTTCCGTCGAACATCACCAAGATATCCCTCACAAAGTTTGGTTTCTTCAACTCCACTGTCATGCATACGCTAGGAAAGGTTCCCAACCTTCAAGTTCTGAAATTGTCATCGCAGACGAATGATACTAGATTTGACCTGCATTGTGCCACGGGAGGGTTCCTTCAGCTTCAAGTGTTTGAGATGATTGCAATCAAGGTCAAAATGTGGAGAGTAGACAGAGGTTCAATGCCACGTGTTCGTCGTTTGGTCGTCAGAAGCTGCAAATCCTTGACTCAGCTTCCAAAAGAAGTGTGGTCTTTGAATACCTTGCGGGAAGTGCAGGTCTTGTGGCCCTGTACAGAATTAGCAAAAGGACTCCAAAATTTGGTGATGAACAATGCTTGTAAGCTCGTCGTCTATCCTCTCTCAGCAAATGATGAATTAGATTTTCTCTAA 2649 0.4658 MADSIVVFLIDKLTRLLVEEAKLLTGVRDQVTSLQSELRFMNIFLRNSSKGKRKEHDMVAELVSQIRDVAHEAEDVIDTYVACIIKQSRRNVIGKVGFRGVDHALMLHQVAVKVDGIKARIKEIFDNKERYGIDDGKRGSEEEAERIRRQRREVEEEEVVGFALDSKVVIEKLTVSDSRLKVVSVVGMGGLGKTTLARKVYNSNRVKNMFPCRAWGYVSNDYRPREFFLSLLKCLMSTSKYSNLFKKREETSVSDEELKMKVRECLNRSKYLVVVDDVWQKQVWNEVKGAFPDDQNGSRILMTTRSAEVASHAGPVPPYALPFLTKEESWELLSKKVFRGEDCPCDLESLGKLIADSCDGLPLALIVMAGILANKKSPRDWSRIKDHVNWHLGRDNTLKDILKLSYDSLPARLKPCFLYFGMYPEDYRIPVKQLIQLWISEGLLTQETSGGQDIPEPEYIAEEYLDELVDRSLIQVVSRTNDGGVKTCRIHDLLRDLCISESREDKFFEVCGEIDIQNLNSCPRKLSLQGTLFHFSSSIVSDYTISATRSLLCFGQEVYKVKANHWRWLLKSFRLARVLDLGRMNVNSIPTDLEKLIHLRYLRIHSHNLETIPPSICRLWNLETLDLRGSPIKSFSGELWQLKQLRHLLLFGPVGLPEMPSESKTMPNLQTLSTVALDPRTASLLDSRRFPGMTKLGIHYERRDKCNAKIQLQSLHRLSHLQKLKVIGTTEIPQNANVFPSNITKISLTKFGFFNSTVMHTLGKVPNLQVLKLSSQTNDTRFDLHCATGGFLQLQVFEMIAIKVKMWRVDRGSMPRVRRLVVRSCKSLTQLPKEVWSLNTLREVQVLWPCTELAKGLQNLVMNNACKLVVYPLSANDELDFL 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4714g00003 882 CDD RX-CC_like 2 126 IPR038005 -
Vium4714g00003 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 420 IPR027417 -
Vium4714g00003 882 Gene3D - 411 500 IPR036388 -
Vium4714g00003 882 Gene3D - 140 315 IPR027417 -
Vium4714g00003 882 Coils Coil 137 160 - -
Vium4714g00003 882 Gene3D Ribonuclease Inhibitor 548 878 IPR032675 -
Vium4714g00003 882 Gene3D - 6 120 - -
Vium4714g00003 882 PRINTS Disease resistance protein signature 265 279 - -
Vium4714g00003 882 PRINTS Disease resistance protein signature 358 372 - -
Vium4714g00003 882 PRINTS Disease resistance protein signature 617 633 - -
Vium4714g00003 882 PRINTS Disease resistance protein signature 182 197 - -
Vium4714g00003 882 Pfam Rx N-terminal domain 6 89 IPR041118 -
Vium4714g00003 882 PANTHER DISEASE RESISTANCE PROTEIN RP 34 807 IPR044974 GO:0006952
Vium4714g00003 882 SUPERFAMILY L domain-like 489 845 - -
Vium4714g00003 882 FunFam Probable disease resistance protein At1g61300 141 316 - -
Vium4714g00003 882 Pfam NB-ARC domain 169 407 IPR002182 GO:0043531
Vium4714g00003 882 FunFam Probable disease resistance protein At1g63360 406 500 - -
Vium4714g00003 882 Gene3D - 323 410 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4714g00003 Vium-Chr4714 33824 36989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4714g00003 180 423 WRKY Transcription Factor Family AT5G45050 24.303 3.18e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4714g00003 - - gmx:100780593 1058.9