Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4714g00002 ATGAAGAGAGAAAGAGAGGTTGATAGTCTAACCATGGCGAATTGTCTGATGTTGCTTTCTCGCGGAGGTGAATTCGAGGCGACATACTCAAGCTCTTCCATGAGCAACCGTGTGTTCGAGTGCAAGACATGCAATAGGCAGTTTCCTTCGTTTCAAGCACTTGGTGGGCACAGGGCGAGTCACAAGAAACCTAGGTTGATGCCAGGAGATAACAGCGAAGGCCAATTGCTTCATGATTCACCGCCAAAGCCTAAGACTCACGAGTGCTCGATTTGTGGATTGGAGTTTGCTATAGGCCAAGCTTTGGGAGGTCACATGAGGAGACACAGAGCTGTAAATTTGAACGGAAACCTGCATAATTCCACCACTGTCAGCAGTAGCAGTGGTGGTAGCAGCAGCATCGATTCTTCAACCAAGAACAAAGTTCCCCACAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGATTTTGAAGATAGGAAAACCGACTGCTTTGGTTGATTATTTGTATTAG 534 0.4551 MKREREVDSLTMANCLMLLSRGGEFEATYSSSSMSNRVFECKTCNRQFPSFQALGGHRASHKKPRLMPGDNSEGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAVNLNGNLHNSTTVSSSSGGSSSIDSSTKNKVPHKRVLVLDLNLTPFENDLEILKIGKPTALVDYLY 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4714g00002 177 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vium4714g00002 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Vium4714g00002 177 Pfam C2H2-type zinc finger 38 64 - -
Vium4714g00002 177 Pfam C2H2-type zinc finger 87 111 - -
Vium4714g00002 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Vium4714g00002 177 MobiDBLite consensus disorder prediction 117 140 - -
Vium4714g00002 177 PANTHER ZINC FINGER PROTEIN ZAT5 5 159 - -
Vium4714g00002 177 Gene3D Classic Zinc Finger 36 109 - -
Vium4714g00002 177 SMART c2h2final6 87 109 IPR013087 -
Vium4714g00002 177 SMART c2h2final6 39 61 IPR013087 -
Vium4714g00002 177 MobiDBLite consensus disorder prediction 55 82 - -
Vium4714g00002 177 SUPERFAMILY beta-beta-alpha zinc fingers 37 109 IPR036236 -
Vium4714g00002 177 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Vium4714g00002 177 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4714g00002 Vium-Chr4714 21086 21822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4714g00002 12 168 C2H2 Transcription Factor Family AT2G28710 44.643 2.19e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4714g00002 zf-C2H2_6 7.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4714g00002 - - gmx:100781134 300.827