Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4713g00049 ATGGCTTCTTTTCCTCTTTACAAGCCAACCCACACCATTTTCTCCAATACCCAGTTCAAGGGCTTGCGCAATGGCTTTTTCTGGCGACCCTCTTACTCCTTTGAGGCTCTTCCTGAAAACAAAGTACAACCCATTAGAGCTTTGGTTGCTAAATCCCCATTTCCCCTGTTTCAACCTCCCCAAGTTGAAGAAGAGTCACCGTCTGAGTTGGAGCCCGTGGATCCTGACTTCTACAAGATTGGGTATGTCCGAAGCATGCGAGCTTATGGTGTTCAATTTAAAGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAGCCTCTTCGCCGACCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCGGATATAATTCCCTTGGATCATCCAATATTTGATATTATTAACTCAACAAATCCAGAGACAGATTGGGACCTAAGGTTGGCATCCCTTCTCCTATTTGCATTTGACTGTGAAGGCAACTTCTGGCAATTGTATGGTGACTTCTTACCAAGTGCAGATGAGTGCACTAGCCTACTTCTAGCTTCAGAGGAAGAACTTTTGGAGCTACAGGATCCCAATCTCGCTTCCACCATTAGAAAACAGCAACAAAGAGCCTTAGAATTCTGGCACAAGCATTGGCACAGTGAAGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCACAAAGGTTCATTTGGGCAGTAAGTATTGCACAGTCACGATGTATTAACATGCAAATGAGAGTTGGTGCGCTAAATCAAGAAGCAAACATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTCATAAATGCTGGACATCGAGTTAGAAAGGGAGATGAGATGACAGTTAATTACATGAGCTCGCAGAAGAATGACATGTACATGCAAAGATATGGATTTTCATCACCTGTGAACCCATGGGATGAGGTACAGTTCTCAGGCAATGCACGTATTCATTTGGATTCCTTCTTGTCAATCTTCAATATTTCTGGCCTTCGCGAAGAGTATTACCATAACAACGATTTGTCAATGGATGGCAATACTTTTGTTGATGGAGCAGTCATAGCTGCATCACGAACATTGCCAAGTTGGTCAGACGGGGATGTTCCTCCAATTCCTAGTGTGGAAAGAGAGGCTGTGAAGGAGTTGCAAAATGAATGCCAAAAGATGCTGGCAGGATTTGTTACAACCTCTAAGCAAGACCAGAAATTGCTAGATTCCATGACAGATGCTACGAGGACATTTGAAGCTGCAATTAGGTATAGATTGCACAGAAAATTGTTGATGGAGAAAGTTATCAAAGCATTAGACATGTACCAAGAGAAAATACTGTTTTAA 1449 0.4244 MASFPLYKPTHTIFSNTQFKGLRNGFFWRPSYSFEALPENKVQPIRALVAKSPFPLFQPPQVEEESPSELEPVDPDFYKIGYVRSMRAYGVQFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTNPETDWDLRLASLLLFAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDPNLASTIRKQQQRALEFWHKHWHSEAPLKIKRLARDPQRFIWAVSIAQSRCINMQMRVGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGHRVRKGDEMTVNYMSSQKNDMYMQRYGFSSPVNPWDEVQFSGNARIHLDSFLSIFNISGLREEYYHNNDLSMDGNTFVDGAVIAASRTLPSWSDGDVPPIPSVEREAVKELQNECQKMLAGFVTTSKQDQKLLDSMTDATRTFEAAIRYRLHRKLLMEKVIKALDMYQEKILF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4713g00049 482 CDD SET_LSMT 90 337 - -
Vium4713g00049 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 66 455 - -
Vium4713g00049 482 SUPERFAMILY SET domain 98 338 IPR046341 -
Vium4713g00049 482 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Vium4713g00049 482 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 83 337 - -
Vium4713g00049 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Vium4713g00049 482 Gene3D - 360 480 IPR036464 -
Vium4713g00049 482 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
Vium4713g00049 482 FunFam Plastid transcriptionally active 14 359 479 - -
Vium4713g00049 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 474 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium4713g00049 SET 2.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4713g00049 - - gmx:100790985 848.195