Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4713g00027 ATGATGGGTGAAACTGAGTCAGAGAGTCCCTTAGGTTCACCAACCATGAGCCCTATGAGAACAGCAAAACCATGCAGAAGTCCATCAGAGCACAGCATAAGTTTGATGGTTATTTTGGCAGCCATAGTTTGTGCCTTGCTATGTGCTCTTGGTCTGAACACAATGTTGCAATGTGTGTTCCAATGTGCGAATCGTGTTGTGACGGAACCCTTTCAATGGATTGCCTCAAGGAGACTGAATTCGGGCCTGAAGAAGAGAGAGGTGGTGGCTCTGCCAACCTCCACCTACACTCATTCCGGTGGCTCTCCGTGTAACTGTGCGATTTGCTTATCGGAGTTCTCTGATGGAGACAGCATAAGGTTCCTCCCAAACTGCAATCACCGTTTTCATGTTCACTGCATTGATAAGTGGCTCTTTTCTCACTCTTCTTGCCCTACTTGTAGGACCCTCCTTAAGTCTACTCATTCACTACACTCCTTGCATGTTATAGTATCATAG 498 0.4659 MMGETESESPLGSPTMSPMRTAKPCRSPSEHSISLMVILAAIVCALLCALGLNTMLQCVFQCANRVVTEPFQWIASRRLNSGLKKREVVALPTSTYTHSGGSPCNCAICLSEFSDGDSIRFLPNCNHRFHVHCIDKWLFSHSSCPTCRTLLKSTHSLHSLHVIVS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4713g00027 165 CDD RING-H2_EL5-like 106 148 - -
Vium4713g00027 165 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vium4713g00027 165 MobiDBLite consensus disorder prediction 1 22 - -
Vium4713g00027 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 154 IPR013083 -
Vium4713g00027 165 Pfam Ring finger domain 105 148 IPR001841 -
Vium4713g00027 165 SUPERFAMILY RING/U-box 105 155 - -
Vium4713g00027 165 SMART ring_2 106 147 IPR001841 -
Vium4713g00027 165 MobiDBLite consensus disorder prediction 1 25 - -
Vium4713g00027 165 PANTHER RING-H2 FINGER PROTEIN ATL78 29 155 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4713g00027 Vium-Chr4713 213911 214429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4713g00027 19 151 C3H Transcription Factor Family AT2G17450 43.151 9.87e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4713g00027 - K19040 gmx:100803003 254.218