Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4713g00018 ATGGCGCCGGGAGCGGGAGGCTTGCAGCTCACTTCACTCGCCGGTAATAGTAGAGCCGCCACAGCTGACTCCGATGACCTCGAGGATGTGCGGCTCTTGGACTCCTACGACAAAATCGACGCCGAAGCGAGGCGGATTCAGGTGACGGTCACTGGAATGACCTGCGCCGCTTGCTCCAATTCCGTCGAATCAGCTCTCAAATCACTTGACGGAGTTATCAGCGCCTCCGTCGCACTGCTTCAGAACAAAGCCGAGGTAGTCTTCAACTCGGCTCTGCTCAAGGATGAAGACATTAAAAATGCAATTGAAGATGCTGGGTTTGAAGCCGACATATTACCTGAATCCAGTACTGTTGGAAAGATGCCACATGGAACCTTGGTGGGACAGTTCACAATTGGAGGAATGACATGTGCAGCATGTGTAAATTCTGTTGAAGGTATTTTAAGAAATCTTCCAGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCGTTAGGTGAAGTTGAATATGATCCCAGTGTAATTAGTAAAGATGATATAGTCAACGCGATTGAAGATTGTGGTTTTGATGCTTCATTTTTACAAAGCAATGAGCAGGATAAAATAATCTTAGGGGTGGTTGGTGTGTACAGTGTGATTGATGGACAAGTTTTAGAAGGCATTATTAGCAGCATAAAAGGAGTCAGGCAGTTTCATTTTGACCAGATTTCAGGTGAATTGGATGTTCTGTTTGATCCGGAAGTTCTCAGTTCTAGATTCTTAGTTGATGCAATCCAGGGCGGAAGCAATGGGAAGTTTATATTACATGTTAGAAGCCCTTATACGAGAATGGCTTCTAAAGGCGTTGAAGAGATCTCAACTATATTTCGGCTCTTTGTCTCTAGTTTGTTACTTAGTATTCCTCTCTTCTTCGTGAGGGTAGTTTGTCCTCATATACCAATGGTGTATTCCCTGTTACTTCGGCGATGTGGGCCTTTCCTCATGAGTGATTGGTTGAAATGGGCATTGGTGAGTCTCATTCAATTTGTGATCGGTAAGCGCTTCTACATTGCAGCTGGCAGAGCTCTTAGAAATGGTTCTACAAACATGGATGTCCTTGTTGCAGTGGGTACTACTGCGTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGATTTTGGTCTCCAACTTACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCTATCAAGAAATTAGTAGAACTTGCTCCTGCGACTGCTTTACTAGTTGTCAAAGATAAAGGTGGTAAATGTATTGAAGAAAGGGAAATTGATTGTTTGCTTGTTCAACCTGGGGACACATTGAAAGTTCTTCCTGGTGCAAAGATCCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAAAGCATGGTAACAGGTGAATCTGTGCCTATTTTAAAGGAGGTGAATGCTTCTGTTATTGGAGGCACAATAAATTTGCATGGTGTCCTTCATGTTCAAGCTGCCAAAGTAGGATCTGAAACAGTTCTGAGCCAGATTATTAGTTTGGTTGAGACAGCGCAGATGTCCAAAGCTCCTATTCAGAAGTTTGCTGATTATGTGGCAAGTATATTTGTTCCATTGGTCGTTTCTTTGGCATTATTGACGTTATTGTGCTGGTACATTGCTGGGTCTATTGGAGCTTACCCAGATGACTGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTGATGTTCTCGATTTCTGTAGTAGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACGGCCGTGATGGTGGCAACAGGGGTTGGGGCTAACAATGGAGTGTTAATCAAAGGAGGTGATGCATTGGAAAGGGCCCAGAGGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCACTGTTACTACAGCCAAGACATTCACTGGAATGGAACGTGGAGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTAGCAAAAGCAATATTATCTTATGCACGCCATTTTCATTTCTTTGATGACTCTTCTGCTGATACTGGTACTGAGAATAATGCTGGGAATGACGTGAAAACTGGTTGGCTTTTTGACGTCTCAGACTTCTCGGCTCTTCCTGGAAGAGGTGTTCAATGTTTGATAGATGGGAAGCGCATTTTGGTTGGTAACAGGAAGTTGATGGCGGAAAATGGCATACATATTTCAACAGAGGTGGAAAATTTTGTGGTAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTGGTAACATATAATGATATATTAACTGGAGTCTTGGGGATTGCGGACCCACTAAAGAGAGAAGCTTCTGTAGTCATAGAGGGTCTCCAGAAAATGGGTGTCACACCTGTTATGGTTACTGGAGATAACTGGAGAACAGCTCGTGCTGTTGCTAAGGAGGTTAGCATACAAGATGTTAGGGCAGAGGTTATGCCAGCAGGAAAAGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGCATAGTTGCTATGGTAGGTGATGGCATCAATGATTCTCCTGCATTAGCTGCAGCTGATGTTGGTATGGCTATCGGAGCTGGAACTGATATTGCAATTGAAGCTGCTGACTATGTGCTGATGAAAAATAATTTAGAAGATGTGATAACAGCCATTGATCTTTCCCGGAAGACCTTCTCTCGAATTCGACTGAATTATGTGTTCGCAATGGCTTACAATGTTGTGGCCATACCAATTGCGGCTGGTGTTTTCTACCCTTCACTGGGGATCAAGCTACCACCGTGGGTTGCTGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCCAGACTTACTGCAATACTTGAAATAATAGTAGAATAG 2991 0.4346 MAPGAGGLQLTSLAGNSRAATADSDDLEDVRLLDSYDKIDAEARRIQVTVTGMTCAACSNSVESALKSLDGVISASVALLQNKAEVVFNSALLKDEDIKNAIEDAGFEADILPESSTVGKMPHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYDPSVISKDDIVNAIEDCGFDASFLQSNEQDKIILGVVGVYSVIDGQVLEGIISSIKGVRQFHFDQISGELDVLFDPEVLSSRFLVDAIQGGSNGKFILHVRSPYTRMASKGVEEISTIFRLFVSSLLLSIPLFFVRVVCPHIPMVYSLLLRRCGPFLMSDWLKWALVSLIQFVIGKRFYIAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKCIEEREIDCLLVQPGDTLKVLPGAKIPADGIVTWGSSYVNESMVTGESVPILKEVNASVIGGTINLHGVLHVQAAKVGSETVLSQIISLVETAQMSKAPIQKFADYVASIFVPLVVSLALLTLLCWYIAGSIGAYPDDWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQRVKYVIFDKTGTLTQGKATVTTAKTFTGMERGEFLKLVASAEASSEHPLAKAILSYARHFHFFDDSSADTGTENNAGNDVKTGWLFDVSDFSALPGRGVQCLIDGKRILVGNRKLMAENGIHISTEVENFVVELEESAKTGILVTYNDILTGVLGIADPLKREASVVIEGLQKMGVTPVMVTGDNWRTARAVAKEVSIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMKNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPIAAGVFYPSLGIKLPPWVAGACMALSSVSVVCSSLLLKRYRRPRLTAILEIIVE 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4713g00018 996 PRINTS Copper-transporting ATPase 1 signature 100 120 - -
Vium4713g00018 996 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Vium4713g00018 996 PRINTS Copper-transporting ATPase 1 signature 45 70 - -
Vium4713g00018 996 ProSitePatterns Heavy-metal-associated domain. 50 80 IPR017969 GO:0046872
Vium4713g00018 996 Gene3D - 640 920 IPR023214 -
Vium4713g00018 996 Gene3D - 43 114 - -
Vium4713g00018 996 FunFam Copper-transporting ATPase RAN1 656 749 - -
Vium4713g00018 996 NCBIfam heavy metal translocating P-type ATPase 363 979 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vium4713g00018 996 Gene3D - 660 803 IPR023299 GO:0000166
Vium4713g00018 996 SUPERFAMILY HMA, heavy metal-associated domain 42 113 IPR036163 GO:0046872
Vium4713g00018 996 CDD HMA 129 192 IPR006121 GO:0046872
Vium4713g00018 996 CDD HMA 47 109 IPR006121 GO:0046872
Vium4713g00018 996 FunFam Copper-exporting P-type ATPase 750 801 - -
Vium4713g00018 996 Pfam haloacid dehalogenase-like hydrolase 645 884 - -
Vium4713g00018 996 PRINTS P-type cation-transporting ATPase superfamily signature 893 905 - -
Vium4713g00018 996 PRINTS P-type cation-transporting ATPase superfamily signature 870 889 - -
Vium4713g00018 996 PRINTS P-type cation-transporting ATPase superfamily signature 817 827 - -
Vium4713g00018 996 PRINTS P-type cation-transporting ATPase superfamily signature 795 806 - -
Vium4713g00018 996 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Vium4713g00018 996 PRINTS P-type cation-transporting ATPase superfamily signature 649 663 - -
Vium4713g00018 996 NCBIfam HAD-IC family P-type ATPase 740 952 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4713g00018 996 NCBIfam HAD-IC family P-type ATPase 402 670 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4713g00018 996 Gene3D - 128 193 - -
Vium4713g00018 996 FunFam Copper-transporting ATPase 1, putative 417 539 - -
Vium4713g00018 996 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 29 988 - -
Vium4713g00018 996 ProSiteProfiles Heavy-metal-associated domain profile. 44 110 IPR006121 GO:0046872
Vium4713g00018 996 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Vium4713g00018 996 Pfam E1-E2 ATPase 432 628 - -
Vium4713g00018 996 ProSitePatterns E1-E2 ATPases phosphorylation site. 651 657 IPR018303 -
Vium4713g00018 996 NCBIfam copper ion binding protein 46 109 IPR006122 GO:0005507
Vium4713g00018 996 NCBIfam copper ion binding protein 129 191 IPR006122 GO:0005507
Vium4713g00018 996 SUPERFAMILY HMA, heavy metal-associated domain 123 198 IPR036163 GO:0046872
Vium4713g00018 996 SFLD p-type atpase 631 922 IPR044492 -
Vium4713g00018 996 FunFam Probable copper-transporting ATPase HMA5 757 927 - -
Vium4713g00018 996 FunFam Copper-exporting P-type ATPase A 42 112 - -
Vium4713g00018 996 Gene3D - 417 539 - -
Vium4713g00018 996 SUPERFAMILY Calcium ATPase, transduction domain A 450 535 IPR008250 -
Vium4713g00018 996 SUPERFAMILY Calcium ATPase, transmembrane domain M 384 945 IPR023298 -
Vium4713g00018 996 CDD P-type_ATPase_Cu-like 290 966 - -
Vium4713g00018 996 Pfam Heavy-metal-associated domain 130 190 IPR006121 GO:0046872
Vium4713g00018 996 Pfam Heavy-metal-associated domain 48 108 IPR006121 GO:0046872
Vium4713g00018 996 FunFam Copper-exporting P-type ATPase A 125 194 - -
Vium4713g00018 996 SUPERFAMILY HAD-like 648 976 IPR036412 -
Vium4713g00018 996 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Vium4713g00018 996 SFLD C1.7: P-type atpase like 631 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4713g00018 Vium-Chr4713 157907 165200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4713g00018 1 996 Primary Pumps ATPases AT5G44790 73.689 0.0 1494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4713g00018 K17686 - gmx:100804960 1771.9