Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4713g00016 ATGCAGATGCAGAAAGGGAATATATCACACATGGACCAGAGTTTATGTGGCTATGTGCAACAGCCTGCTGTAGTGAGTGGATGGATGTATGTGAATGAAAGTGGGCAAATGTGTGGTCCCTATATTAAGGAGCAGTTATACGAAGGCCTAACTACTGGTTTCTTGCCATCTGAGCTTCCTGTGTATCCAGTGATTAATGGCACAATAATGAACCCTGTACCATTGAATTACTTCAAGCAGTTCCCTGATCATGTTTCCACTGGGTTTGCATATCTGATTATGGGTATCTCAGGCACTAGGATGCCTACAACGGCAGTATATGAACAAGGTAGATCTTTTGAGGCTGTTCCTCTGGCTAGTAACCCAGATTCGGAATCTGTGTCACATTCACATGTTAATTACTGCAGTAAGGAATCCAATCACTTAAATCCACACCCAGAGCCAGTCAACAGTTTAATATCTTGTCAGATGTTACGTGAAGAATGCTGTTGGCTTTATGAGGATGAGAAGGGTATGAAACATGGGCCCCATTCTATCAGTGAATTGATTTCTTGGCACAGTCACGGATATCTTAAAGATTCAGCAGTGATCTTTCATTATGATAAGAAGTGTGACACCTTTGTGCTATTGTCTGTTGTCAATGCATTAAAAGGAGATACCACTGGAACCATTTGTAGATCAGGTTCTAAAATTAATGAGGTTGACGATATGGTAGAGTTGATTAGTGAGATATCTGAGAACATTTCTTCCCAATTGCACATGAGTATCATGAAAGCTGGTCGCAGAGTTGTGCTAGATGGAATTATTGGAGATATTATTGCTGAGTATGTTACAGATAAGAAATGTAAGAGGCAAAAGCTTGAATCAGTTGCCCATACTCCTGAAAACAAGATGGTCAGTAAAGGTTCTGTTATTCCCAGTGATCCTGCTACTACTTATATTGATGATGATGAGGCTTATCATGAAAGCTCGAGACTTCCCTCAGCCAGTTTTAAATCAGTTGGAAGCGTTGAGAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTACTTCTTGCTTATTGCATGCAAGTCATGTGGAATGCAGTGTTTTTTGATACAATAGCAGATTATTTATATTCTTGGAGGAAGAGGAAGATTTGGTCTCATCCTGAGCCTCAACCATCTACTAATGCCGAGAAGATTGAATCAGAAGCTTTGGTTCACAAGCCAGATTTCCCTGAAAGCAATGCTAATGGCTATAATCAGTTTGGAGTATTAGTAACAAAAGGAAATCATCCTCATTCATTTTTATCTCCTAGTGGGTTCAAAGGCGGAAACTTACTGAAAGGTCAAAATGTTTCTTCTCCTTACAATGACTCTAAAGATTTGTCATTCATTGTTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCGAAGGTATCTTTTGCTGATTACATACGACATTTTGTTGAGAAGGAAGTGAACAAAATAGTTCCTTTCCCAGAAGAAAACAAAATAAATGAGGTTGCTGTTAGTGACACTTGCTTTTCAGATATACTTGCTGACAAAACGTCTGTGAAGGAAATTCTAAATGAGAAGTCTTTGGATTCTTTTGAGGAAGGAAATTCATTTGGCAAGTCTGCATCTGGAAACCTTATGTCTGATATATTTTCAAAAGCATTTAAGGAGTTGTGTGGATATGGAGATGATGTGGTTGAAGAGGAGAGTGATAACCTACCACCTGGAATTGAAGAGAAGAGTCAAACAGTTGTCCTACACCGCGATTTGAAATTTCGACCTTCGAGGTCAGTTGAATGTCATCCTAAGATCACAGAATATGTTGCAACTGCATTGTGCCGACAAAAATTGCACGATGAAGTTCTGGAAGAGTGGAAGTCGTTGTTTCTTGATTCTGTGCTCGATCAAGTATTTAGATCAAGTACCTTAAAGAAATATTTTATGTCTGATGGGCAGGAGAAAGGAGAAGCGTTCAATTCAAGCAAGGAAAATTTGAATGGTGCTACTTCTGGACTGGGAAGAATGAAGGAAGGAGAAAAGAGTTCTGAAGTACGTCTGGTGATTGGAAAGAATACTTATTACCGCAAGAAGCTATCACGGAAGGAGTTAGTTTCCTCACAGACTGTAGCAGAAAATGATTCTAGGCCAGGGAAGAAGCCTGTGGGCAAGTTGAGGAAACTTGTTTGTGGAGATGTTAGTGAGGCTGTTGAGGTTGAAATAGCTTCTGTTAAACATGGAAAGACAAAGAAGATTAAAGGGAAGAAGGACTCATGTTCCAAGGGCAGGTCTTCTGTCACTGTCAATGCTAGCTCACAAAGTGATCAATTATCTTTAAAGAATAAAGCTGGTCAGAAAGTGTTGAAGTTTTCAGAGAATGTTGTGAATGTTGTGAAATCCACTGTAAAGAAGCTTTCAGTGCCAACTGATAATAGCGTTCGTGAGAAGAAGGTTGTCAAAAGTGATGGCACTGTTAAAGAGAAAGCCACAGGTCATTCCTCGAGACAGATTCAAAGTGCAAATAATAAAACATCAAAATCAAAAAGGAAACATCAAATGGATGGTACAGCATCTTCACATCCAACAAAGATTTTAAAAATTTCAAATGGTGGTGCTTTTCTGGATGGCAGTAAACAAGTTATTGTGGAAAGGACGAAGTCTGCTAAATCCAAACCATTGAACTTGTGTCCTAAATCTAGTGGATGTGCTAGGACTTCTATTGATGGTTGGGAGTGGCATAAATGGTCTAGAAGTGCCAGTCCTGCATATAAAGCACGTGTTAGGGGCCTTCCGAGTGTCCAGAACAAGTGCATATATTCTGAAAATAATTTATCTCAGTTGCCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGAGTAAAATTACGTAACCTTCTTGCTGCTGCAGAGGGTGCGGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCGATTACGTTTTCAAAGGAGCAAGATCCATGACTGGGGACTTGTTGCCTTGGAGCCAATTGAAGCAGAGGACTTTGTGATTGAGTATATTGGAGAACTAATTCGTCCTCGGATATCAGATATACGGGAACGTCAATATGAGAGGACGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCCACAAAGAGAGGTGGAATTGCTAGATTTATTAACCACTCATGCCAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGACATATAAAGGCTGGTGAAGAAATAACATACAATTACAAGTTCCCCTTGGAGGAGAAAAAGATTCCTTGCAACTGTGGTTCCAGAAAGTGTCGTGGATCATTGAATTAG 3372 0.3977 MQMQKGNISHMDQSLCGYVQQPAVVSGWMYVNESGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLIMGISGTRMPTTAVYEQGRSFEAVPLASNPDSESVSHSHVNYCSKESNHLNPHPEPVNSLISCQMLREECCWLYEDEKGMKHGPHSISELISWHSHGYLKDSAVIFHYDKKCDTFVLLSVVNALKGDTTGTICRSGSKINEVDDMVELISEISENISSQLHMSIMKAGRRVVLDGIIGDIIAEYVTDKKCKRQKLESVAHTPENKMVSKGSVIPSDPATTYIDDDEAYHESSRLPSASFKSVGSVENFWWSYAVVRKVLLAYCMQVMWNAVFFDTIADYLYSWRKRKIWSHPEPQPSTNAEKIESEALVHKPDFPESNANGYNQFGVLVTKGNHPHSFLSPSGFKGGNLLKGQNVSSPYNDSKDLSFIVESVENELHFSSKVSFADYIRHFVEKEVNKIVPFPEENKINEVAVSDTCFSDILADKTSVKEILNEKSLDSFEEGNSFGKSASGNLMSDIFSKAFKELCGYGDDVVEEESDNLPPGIEEKSQTVVLHRDLKFRPSRSVECHPKITEYVATALCRQKLHDEVLEEWKSLFLDSVLDQVFRSSTLKKYFMSDGQEKGEAFNSSKENLNGATSGLGRMKEGEKSSEVRLVIGKNTYYRKKLSRKELVSSQTVAENDSRPGKKPVGKLRKLVCGDVSEAVEVEIASVKHGKTKKIKGKKDSCSKGRSSVTVNASSQSDQLSLKNKAGQKVLKFSENVVNVVKSTVKKLSVPTDNSVREKKVVKSDGTVKEKATGHSSRQIQSANNKTSKSKRKHQMDGTASSHPTKILKISNGGAFLDGSKQVIVERTKSAKSKPLNLCPKSSGCARTSIDGWEWHKWSRSASPAYKARVRGLPSVQNKCIYSENNLSQLPNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYERTGIGSSYLFRLDDGYVVDATKRGGIARFINHSCQPNCYTKVISVEGQKKIFIYAKRHIKAGEEITYNYKFPLEEKKIPCNCGSRKCRGSLN 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4713g00016 1123 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 14 1123 IPR044570 GO:0042800|GO:0051568
Vium4713g00016 1123 ProSiteProfiles Post-SET domain profile. 1107 1123 IPR003616 -
Vium4713g00016 1123 ProSiteProfiles GYF domain profile. 161 211 IPR003169 GO:0005515
Vium4713g00016 1123 SMART PostSET_3 1107 1123 IPR003616 -
Vium4713g00016 1123 ProSiteProfiles SET domain profile. 984 1101 IPR001214 GO:0005515
Vium4713g00016 1123 MobiDBLite consensus disorder prediction 760 775 - -
Vium4713g00016 1123 MobiDBLite consensus disorder prediction 751 775 - -
Vium4713g00016 1123 Pfam SET domain 996 1100 IPR001214 GO:0005515
Vium4713g00016 1123 MobiDBLite consensus disorder prediction 815 861 - -
Vium4713g00016 1123 Gene3D SET domain 810 1123 IPR046341 -
Vium4713g00016 1123 Gene3D - 153 243 IPR035445 -
Vium4713g00016 1123 Gene3D - 17 88 IPR035445 -
Vium4713g00016 1123 SMART set_7 984 1107 IPR001214 GO:0005515
Vium4713g00016 1123 SUPERFAMILY SET domain 980 1120 IPR046341 -
Vium4713g00016 1123 SUPERFAMILY GYF domain 157 212 IPR035445 -
Vium4713g00016 1123 CDD SET_SETD1 972 1119 IPR037841 GO:0042800|GO:0048188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4713g00016 Vium-Chr4713 124365 138032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4713g00016 983 1123 C2H2 Transcription Factor Family AT2G23740 36.810 1.13e-18 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium4713g00016 SET 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4713g00016 - - gmx:100805708 1724.52