Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4713g00015 ATGGTATTCTCAACTGCTTTTCTCCATGAAGGGGGCCCCTTTTATTCTAGAAAAAGGCCAAGGGCATTAGATCTTGGACATCAAGATATAGATTTACATGCAGATGCAGAAAGGTGCATTAGTACTGGTGATGTTCCCTCTTCCAGTAACACTGACGATAAAGTTGACCCAGATTCTGGAATGGAGATGAGCTGTCCATCAAATGTTAACAATGGCTATGTTCCTGTGTGCTCTACCACAGGGAATATATCACACATGGACCAGAGTTTATGTGGCTATGTGCAACAGCCTGCTGTAGTGAGTGGATGGATGTATGTGAATGAAAGTGGGCAAATGTGTGGTCCCTATATTAAGGAGCAGTTATACGAAGGCCTAACTACTGGTTTCTTGCCATCTGAGCTTCCTGTGTATCCAGTGATTAATGGCACAATAATGAACCCTGTACCATTGAATTACTTCAAGCAGTTCCCTGATCATGTTTCCACTGGGTTTGCATATCTGATTATGGGTATCTCAGGCACTAGGATGCCTACAACGGCAGTATATGAACAAGGTAGATCTTTTGAGGCTGTTCCTCTGGCTAGTAACCCAGATTCGGAATCTGTGTCACATTCACATGTTAATTACTGCAGTAAGGAATCCAATCACTTAAATCCACACCCAGAGCCAGTCAACAGTTTAATATCTTGTCAGATGTTACGTGAAGAATGCTGTTGGCTTTATGAGGATGAGAAGGGTATGAAACATGGGCCCCATTCTATCAGTGAATTGATTTCTTGGCACAGTCACGGATATCTTAAAGATTCAGCAGTGATCTTTCATTATGATAAGAAGTGTGACACCTTTGTGCTATTGTCTGTTGTCAATGCATTAAAAGGAGATACCACTGGAACCATTTGTAGATCAGGTTCTAAAATTAATGAGGTTGACGATATGGTAGAGTTGATTAGTGAGATATCTGAGAACATTTCTTCCCAATTGCACATGAGTATCATGAAAGCTGGTCGCAGAGTTGTGCTAGATGGAATTATTGGAGATATTATTGCTGAGTATGTTACAGATAAGAAATGTAAGAGGCAAAAGCTTGAATCAGTTGCCCATACTCCTGAAAACAAGATGGTCAGTAAAGGTTCTGTTATTCCCAGTGATCCTGCTACTACTTATATTGATGATGATGAGGCTTATCATGAAAGCTCGAGACTTCCCTCAGCCAGTTTTAAATCAGTTGGAAGCGTTGAGAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTACTTCTTGCTTATTGCATGCAAGTCATGTGGAATGCAGTGTTTTTTGATACAATAGCAGATTATTTATATTCTTGGAGGAAGAGGAAGATTTGGTCTCATCCTGAGCCTCAACCATCTACTAATGCCGAGAAGATTGAATCAGAAGCTTTGGTTCACAAGCCAGATTTCCCTGAAAGCAATGCTAATGGCTATAATCAGTTTGGAGTATTAGTAACAAAAGGAAATCATCCTCATTCATTTTTATCTCCTAGTGGGTTCAAAGGCGGAAACTTACTGAAAGGTCAAAATGTTTCTTCTCCTTACAATGACTCTAAAGATTTGTCATTCATTGTTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCGAAGGTATCTTTTGCTGATTACATACGACATTTTGTTGAGAAGGAAGTGAACAAAATAGTTCCTTTCCCAGAAGAAAACAAAATAAATGAGGTTGCTGTTAGTGACACTTGCTTTTCAGATATACTTGCTGACAAAACGTCTGTGAAGGAAATTCTAAATGAGAAGTCTTTGGATTCTTTTGAGGAAGGAAATTCATTTGGCAAGTCTGCATCTGGAAACCTTATGTCTGATATATTTTCAAAAGCATTTAAGGAGTTGTGTGGATATGGAGATGATGTGGTTGAAGAGGAGAGTGATAACCTACCACCTGGAATTGAAGAGAAGAGTCAAACAGTTGTCCTACACCGCGATTTGAAATTTCGACCTTCGAGGTCAGTTGAATGTCATCCTAAGATCACAGAATATGTTGCAACTGCATTGTGCCGACAAAAATTGCACGATGAAGTTCTGGAAGAGTGGAAGTCGTTGTTTCTTGATTCTGTGCTCGATCAAGTATTTAGATCAAGTACCTTAAAGAAATATTTTATGTCTGATGGGCAGGAGAAAGGAGAAGCGTTCAATTCAAGCAAGGAAAATTTGAATGGTGCTACTTCTGGACTGGGAAGAATGAAGGAAGGAGAAAAGAGTTCTGAAGTACGTCTGGTGATTGGAAAGAATACTTATTACCGCAAGAAGCTATCACGGAAGGAGTTAGTTTCCTCACAGACTGTAGCAGAAAATGATTCTAGGCCAGGGAAGAAGCCTGTGGGCAAGTTGAGGAAACTTGTTTGTGGAGATGTTAGTGAGGCTGTTGAGGTTGAAATAGCTTCTGTTAAACATGGAAAGACAAAGAAGATTAAAGGGAAGAAGGACTCATGTTCCAAGGGCAGGTCTTCTGTCACTGTCAATGCTAGCTCACAAAGTGATCAATTATCTTTAAAGAATAAAGCTGGTCAGAAAGTGTTGAAGTTTTCAGAGAATGTTGTGAATGTTGTGAAATCCACTGTAAAGAAGCTTTCAGTGCCAACTGATAATAGCGTTCGTGAGAAGAAGGTTGTCAAAAGTGATGGCACTGTTAAAGAGAAAGCCACAGGTCATTCCTCGAGACAGATTCAAAGTGCAAATAATAAAACATCAAAATCAAAAAGGAAACATCAAATGGATGGTACAGCATCTTCACATCCAACAAAGATTTTAAAAATTTCAAATGGTGGTGCTTTTCTGGATGGCAGTAAACAAGTTATTGTGGAAAGGACGAAGTCTGCTAAATCCAAACCATTGAACTTGTGTCCTAAATCTAGTGGATGTGCTAGGACTTCTATTGATGGTTGGGAGTGGCATAAATGGTCTAGAAGTGCCAGTCCTGCATATAAAGCACGTGTTAGGGGCCTTCCGAGTGTCCAGAACAAGTGCATATATTCTGAAAATAATTTATCTCAGTTGCCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGAGTAAAATTACGTAACCTTCTTGCTGCTGCAGAGGGTGCGGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCGATTACGTTTTCAAAGGAGCAAGATCCATGACTGGGGACTTGTTGCCTTGGAGCCAATTGAAGCAGAGGACTTTGTGATTGAGTATATTGGAGAACTAATTCGTCCTCGGATATCAGATATACGGGAACGTCAATATGAGAGGACGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCCACAAAGAGAGGTGGAATTGCTAGATTTATTAACCACTCATGCCAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGACATATAAAGGCTGGTGAAGAAATAACATACAATTACAAGTTCCCCTTGGAGGAGAAAAAGATTCCTTGCAACTGTGGTTCCAGAAAGTGTCGTGGATCATTGAATTAG 3597 0.3995 MVFSTAFLHEGGPFYSRKRPRALDLGHQDIDLHADAERCISTGDVPSSSNTDDKVDPDSGMEMSCPSNVNNGYVPVCSTTGNISHMDQSLCGYVQQPAVVSGWMYVNESGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLIMGISGTRMPTTAVYEQGRSFEAVPLASNPDSESVSHSHVNYCSKESNHLNPHPEPVNSLISCQMLREECCWLYEDEKGMKHGPHSISELISWHSHGYLKDSAVIFHYDKKCDTFVLLSVVNALKGDTTGTICRSGSKINEVDDMVELISEISENISSQLHMSIMKAGRRVVLDGIIGDIIAEYVTDKKCKRQKLESVAHTPENKMVSKGSVIPSDPATTYIDDDEAYHESSRLPSASFKSVGSVENFWWSYAVVRKVLLAYCMQVMWNAVFFDTIADYLYSWRKRKIWSHPEPQPSTNAEKIESEALVHKPDFPESNANGYNQFGVLVTKGNHPHSFLSPSGFKGGNLLKGQNVSSPYNDSKDLSFIVESVENELHFSSKVSFADYIRHFVEKEVNKIVPFPEENKINEVAVSDTCFSDILADKTSVKEILNEKSLDSFEEGNSFGKSASGNLMSDIFSKAFKELCGYGDDVVEEESDNLPPGIEEKSQTVVLHRDLKFRPSRSVECHPKITEYVATALCRQKLHDEVLEEWKSLFLDSVLDQVFRSSTLKKYFMSDGQEKGEAFNSSKENLNGATSGLGRMKEGEKSSEVRLVIGKNTYYRKKLSRKELVSSQTVAENDSRPGKKPVGKLRKLVCGDVSEAVEVEIASVKHGKTKKIKGKKDSCSKGRSSVTVNASSQSDQLSLKNKAGQKVLKFSENVVNVVKSTVKKLSVPTDNSVREKKVVKSDGTVKEKATGHSSRQIQSANNKTSKSKRKHQMDGTASSHPTKILKISNGGAFLDGSKQVIVERTKSAKSKPLNLCPKSSGCARTSIDGWEWHKWSRSASPAYKARVRGLPSVQNKCIYSENNLSQLPNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYERTGIGSSYLFRLDDGYVVDATKRGGIARFINHSCQPNCYTKVISVEGQKKIFIYAKRHIKAGEEITYNYKFPLEEKKIPCNCGSRKCRGSLN 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4713g00015 1198 MobiDBLite consensus disorder prediction 826 850 - -
Vium4713g00015 1198 MobiDBLite consensus disorder prediction 890 936 - -
Vium4713g00015 1198 MobiDBLite consensus disorder prediction 835 850 - -
Vium4713g00015 1198 ProSiteProfiles SET domain profile. 1059 1176 IPR001214 GO:0005515
Vium4713g00015 1198 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 41 1198 IPR044570 GO:0042800|GO:0051568
Vium4713g00015 1198 SMART set_7 1059 1182 IPR001214 GO:0005515
Vium4713g00015 1198 Pfam SET domain 1071 1175 IPR001214 GO:0005515
Vium4713g00015 1198 SUPERFAMILY SET domain 1055 1195 IPR046341 -
Vium4713g00015 1198 Gene3D - 228 318 IPR035445 -
Vium4713g00015 1198 Gene3D - 92 163 IPR035445 -
Vium4713g00015 1198 CDD SET_SETD1 1047 1194 IPR037841 GO:0042800|GO:0048188
Vium4713g00015 1198 Gene3D SET domain 880 1198 IPR046341 -
Vium4713g00015 1198 ProSiteProfiles Post-SET domain profile. 1182 1198 IPR003616 -
Vium4713g00015 1198 ProSiteProfiles GYF domain profile. 236 286 IPR003169 GO:0005515
Vium4713g00015 1198 MobiDBLite consensus disorder prediction 40 61 - -
Vium4713g00015 1198 SUPERFAMILY GYF domain 232 287 IPR035445 -
Vium4713g00015 1198 SMART PostSET_3 1182 1198 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4713g00015 Vium-Chr4713 124365 140562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4713g00015 1058 1198 C2H2 Transcription Factor Family AT2G23740 36.810 1.41e-18 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium4713g00015 SET 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4713g00015 - - gmx:100805708 1856.26