Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4713g00004 ATGGAGGATTCACAGAAGAGTGAAGCAGAGAAAGAGAAAGGAGGTGAAGAAGTGAAATACCGTGGTGTGAGAAAGAGGCCATGGGGTAAGTACGGAGCAGAGATCAGAGATCCAAGAAAACCTACGGGAAGACAGTGGTTAGGAACATTTGACACAGCAGAAGAAGCAGCCAGAGCTTATGATCGTGCAGCACTTCAATTGAGGGGTGCACTTGCAATCCTTAATTTTCCCGATGCATCAGCAAATTCTTCAACTGCAGGCATTGGAAGTTCTTGTTCTTCACAACACAAGGAAGTTATCGAGTTTGAGTATTTGGATGATAAGGTCTTGGAAGATCTTCTTGAGTCAGAAGTGAAGAGAATGAACCAAGATTAA 375 0.4347 MEDSQKSEAEKEKGGEEVKYRGVRKRPWGKYGAEIRDPRKPTGRQWLGTFDTAEEAARAYDRAALQLRGALAILNFPDASANSSTAGIGSSCSSQHKEVIEFEYLDDKVLEDLLESEVKRMNQD 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4713g00004 124 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Vium4713g00004 124 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Vium4713g00004 124 PANTHER DNA-BINDING DOMAIN 6 113 IPR044808 GO:0003700|GO:0009873
Vium4713g00004 124 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Vium4713g00004 124 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Vium4713g00004 124 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Vium4713g00004 124 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Vium4713g00004 124 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Vium4713g00004 124 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Vium4713g00004 124 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4713g00004 Vium-Chr4713 49817 50226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4713g00004 1 120 AP2-EREBP Transcription Factor Family AT3G23230 50.725 4.80e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4713g00004 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4713g00004 - - gmx:100796977 169.859