Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4713g00003 ATGGAGAAAGAGAGATCAAAAGAGGAAGAAGTGAAGTACCGTGGTGTGAGAAAGAGACCGTGGGGTAAGTTTGGAGCAGAGATCAGAGATCCGACAAAACCTACGGGAAGACAATGGTTGGGAACGTTTGACACTGCAGAAGAAGCAGCAAGAGCTTATGATCGTGCAGCCATTGGTTTGAGGGGTGCTCTTGCCATCCTTAATTTCCCCGATGAGTATTACTCTCATCTTCCTTTTCTATTGTCGTCAAATTCTTCTACTGTTGACAGTGGAAGTTCTTTTGCCCGAAAGGAAGTTATTGAGTTCGAGTATCTGGATGACAAGGTCTTGGAGGATCTTCTTGAGATTGAAGAGAAGAGAAGGAATAACAAAGATTAA 378 0.4339 MEKERSKEEEVKYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYYSHLPFLLSSNSSTVDSGSSFARKEVIEFEYLDDKVLEDLLEIEEKRRNNKD 125
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium4713g00003 125 FunFam Ethylene-responsive transcription factor 2 12 71 - -
Vium4713g00003 125 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Vium4713g00003 125 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Vium4713g00003 125 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Vium4713g00003 125 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Vium4713g00003 125 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Vium4713g00003 125 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
Vium4713g00003 125 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Vium4713g00003 125 PANTHER DNA-BINDING DOMAIN 4 115 IPR044808 GO:0003700|GO:0009873
Vium4713g00003 125 SUPERFAMILY DNA-binding domain 12 72 IPR016177 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium4713g00003 Vium-Chr4713 44628 45230 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4713g00003 8 121 AP2-EREBP Transcription Factor Family AT3G23230 57.600 3.20e-41 132
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4713g00003 AP2 4.6e-12 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4713g00003 - - gmx:100500521 191.43