Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4713g00002 ATGGAGGATCCACGTGAAGGGGAGAAAGAGAAGGAGAAGAAGGAGAAAGGAGGGGAAGAAGGGAGGTACCGTGGTGTGAGAAGGAGGCCATGGGGTAAATTTGGAGCAGAGATCAGAGACCCAACAAAACCTACGGGAAGACAATGGTTGGGGACATTTGACACAGCAGAAGCAGCAGCAAGAGCATATGATCGAGCAGCCATAGAATTAAGGGGTGCTCTTGCAATCCTTAATTTCCCTGATGAGTACCATTCTCATCTCCCTTTCTTGTCATCATCATCGTCTTCTTCTTCTTCTTCT 300 0.4767 MEDPREGEKEKEKKEKGGEEGRYRGVRRRPWGKFGAEIRDPTKPTGRQWLGTFDTAEAAARAYDRAAIELRGALAILNFPDEYHSHLPFLSSSSSSSSSS 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4713g00002 100 MobiDBLite consensus disorder prediction 1 26 - -
Vium4713g00002 100 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Vium4713g00002 100 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vium4713g00002 100 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Vium4713g00002 100 PANTHER DNA-BINDING DOMAIN 10 95 IPR044808 GO:0003700|GO:0009873
Vium4713g00002 100 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vium4713g00002 100 FunFam Ethylene-responsive transcription factor 2 22 82 - -
Vium4713g00002 100 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Vium4713g00002 100 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Vium4713g00002 100 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Vium4713g00002 100 SUPERFAMILY DNA-binding domain 22 82 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4713g00002 Vium-Chr4713 41304 41603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4713g00002 19 87 AP2-EREBP Transcription Factor Family AT3G23230 69.565 1.14e-31 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4713g00002 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4713g00002 - - vum:124838904 145.976