Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4713g00001 ATGGAGGATCCACGTGAAGGGGAGAAAGAGAAGGAGAAGAAGGAGAAAGGAGGGGAAGAAGGGAGGTACCGTGGTGTGAGAAGGAGGCCATGGGGTAAATTTGGAGCAGAGATCAGAGACCCAACAAAACCTACGGGAAGACAATGGTTGGGGACATTTGACACAGCAGAAGCAGCAGCAAGAGCATATGATCGAGCAGCCATAGAATTAAGGGGTGCTCTTGCAATCCTTAATTTCCCTGATGAGTACCATTCTCATCTCCCTTTCTTGTCATCATCATCGTCTTCTTCTTCTTCTTCTTCTGCCAGTGTCATTGGAAGTTCTTCTACTGCACAAGGTGAAGTTATTGAGTTTGAGTATTTGGATGACAAGGTATTGGAAGACCTTCTTGAGTCAGAGGAGAAGCGAAAGAAGAAAGAGTAA 423 0.4563 MEDPREGEKEKEKKEKGGEEGRYRGVRRRPWGKFGAEIRDPTKPTGRQWLGTFDTAEAAARAYDRAAIELRGALAILNFPDEYHSHLPFLSSSSSSSSSSSASVIGSSSTAQGEVIEFEYLDDKVLEDLLESEEKRKKKE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4713g00001 140 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Vium4713g00001 140 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Vium4713g00001 140 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vium4713g00001 140 MobiDBLite consensus disorder prediction 88 110 - -
Vium4713g00001 140 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vium4713g00001 140 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Vium4713g00001 140 Coils Coil 127 140 - -
Vium4713g00001 140 SUPERFAMILY DNA-binding domain 22 82 IPR016177 GO:0003677
Vium4713g00001 140 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Vium4713g00001 140 MobiDBLite consensus disorder prediction 1 28 - -
Vium4713g00001 140 FunFam Ethylene-responsive transcription factor 2 22 82 - -
Vium4713g00001 140 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Vium4713g00001 140 PANTHER DNA-BINDING DOMAIN 10 135 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4713g00001 Vium-Chr4713 37532 37954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4713g00001 20 137 AP2-EREBP Transcription Factor Family AT3G23230 62.602 3.25e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4713g00001 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4713g00001 - - gmx:100807295 161.77