Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4709g00001 ATGGCGAACCGTTGGTGGGCCGGGAACATGGCGGTGAAATCTGATGACCCCAACTCATCGCTTCAGCCGAGAGACCAAGACAGCGGCGACAACGCCAACAACGCCACTCCGACCAACAGCGGCAACAGTAACACCAACTTCAACGCTGGCGAGGACGACGACAACCCCGCCAACAACAACGACGGTGACGAGCAGAACCTTAGCAGCGGGCGGCGGCCGAGGGGCAGGCCGCCGGGGTCGAAGAACAAGCCGAAGCCGCCGGTGGTGATAACGAAGGAGAGCCCCAACGCGCTGCGCAGCCACATCCTCGAAATCAGCGGAGGCAGCGACGTGGCGGAGTGCATTGCCACCTTTGCCACGCGCCGCCACCGCGGCGTGTCTGTGCTTAGCGGAAACGGCGTCGTCACCAACGTCACGCTGCGCCAGCCCGCCGCTCCCGGTGGCGTTATCACGCTGCAGGGGAGGTTCGAGATTCTCTCCCTCTCCGGCGCGTTTCTTCCGGCGCCGTCCCCTCCGGAGGCCACCGGACTAACCGTGTACCTCGCCGGAGGGCAGGGTCAGGTCGTCGGAGGAAGCGTGGTGGGACCTCTTGTCGCCTCGGGACCCGTGATGGTTGTAGCTGCCACCTTTGCTAATGCTACATATGAAAGGTTGCCCTTGGAGGATGAACAAGGCGAAGAGGACATGCAAGAGGTGAATGAAGGTGGTGACGGCGGAACACCACCACCTTCTCTGGGTGATCAACCGCCACAAGTTCCAATGCCGGTGTATAATTTGGTCCCTAACAATGGTGACGTGTTCTGGGGAGCCCCACCTCGTCCTCCTCCACCTTCTAATTATTGA 843 0.6157 MANRWWAGNMAVKSDDPNSSLQPRDQDSGDNANNATPTNSGNSNTNFNAGEDDDNPANNNDGDEQNLSSGRRPRGRPPGSKNKPKPPVVITKESPNALRSHILEISGGSDVAECIATFATRRHRGVSVLSGNGVVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPEATGLTVYLAGGQGQVVGGSVVGPLVASGPVMVVAATFANATYERLPLEDEQGEEDMQEVNEGGDGGTPPPSLGDQPPQVPMPVYNLVPNNGDVFWGAPPRPPPPSNY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4709g00001 280 CDD DUF296 99 182 IPR005175 -
Vium4709g00001 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Vium4709g00001 280 MobiDBLite consensus disorder prediction 13 66 - -
Vium4709g00001 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 223 - -
Vium4709g00001 280 MobiDBLite consensus disorder prediction 1 91 - -
Vium4709g00001 280 Gene3D - 98 231 - -
Vium4709g00001 280 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Vium4709g00001 280 FunFam AT-hook motif nuclear-localized protein 98 226 - -
Vium4709g00001 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 269 IPR014476 GO:0003680
Vium4709g00001 280 MobiDBLite consensus disorder prediction 217 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4709g00001 Vium-Chr4709 756 2357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4709g00001 71 262 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 67.179 5.43e-74 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4709g00001 - - aprc:113874473 385.956