Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4706g00001 ATGGCTAGAAGGATTATGGGTTTTTCTCCTAATAGAGGGCAGGGTCCACAGTACCCACCTATGGTTAGACAAAGGTCTTTGTACAACCTCAGTTTTGAGGATGTTCAGAGACCGTTGTTGGGAAACACAGGGAGTGAAAGTGCATATCTTGTGCAAGAACCTTCATGTGATCATCATTCTTTTACCAAAACCAGTGGCATTGGTGTGGCTTGGAGGGGAATTGTTGACCATGAACACATGAACAGGTCGGTAGAAACCCTCTTGAATGAACCTACTTTAGGGGAATCAACTTTAGATCATTTCCTAGCTAATGCAGGTGTGATCAATGTAGCTGATCAGAATACCAACGTTCACACTCTGCCACCAATGGTGATTGATTCAATACATCAACAACATTGGTTGCAAATTCCTTCTGTTAGCACCCACCAACCTCATCATCATCATCATCATCAGTCACAGATAATTGGAAACTCTCAAGATTTCAGTGTTTCTAATAACTCATTCTACGATAGCCAACTTAGTTATTCAGAAAACTCAGCGGGGATTCCAATGTCTCCTTCCTATTCATATTCTTCTAAGACCTCTCTTTTTAGGAAGAGAAAGCACTCAAATGATGAGATGCTGGAAAAGGCTGTAGAGAGAAGACAAAAGAGAATGGCTAAGAACAGGGAATCTGCAGCAAGATCTAGGGCAAAGAAGCAGGCGTATACGAACGAGATAAAAAATACCATCCTCAACCGTCCTCAGCCATCCTCAGCCGTCCTCAACCGTCCAGCCATTTGGGGGTTCACAGCAAAAACAACAACATATCAGAAATGCACAAGCCAGAAGCTTCATAGCACAGTATACAACATCAACAAAAGACATCATCAACAAATCAGAAGTTTCGCGGTGGCCGTCGGGACTGAAGATCGCGTGCCCCAGATCGTGACGGTACCGGAGGCGGAGGCGACCCAGTCGCCGTTGAGGGAGAAACGCGCGATGGGCTTCGCGATTTGGGCTTCGCGATCTGGAGCACTGTCGGAGGCAGAGGCAGAGGCAGAGGCAGCAGTGACGGTGGCGCGGTGGAGGAACCCTATTTCCGGCAGAGGCAGAGGCAGAGGTCGCGATCTGGAGGAACCCGCGACGCAAAGGTCGCGATCTGGAGCACTGTCGGAGGCAGACGCAGCAGTGACGGTGGCGCGGTGGAGGAACCCTATTTCTGGCAGAGGTCGCGATCTGGAGGAACCCGCGACGCAGAGGTCGCGATCTGGAGCGGTGGATGAAACCCGCGACGCAGAGGCAGCCGTGGAAGAGGTGGAGGAACCCGCGACGCAGAGGAAGAATGGAGAGCAGGAGGAAGGAGAAGCTGAGGAAGGAGAAGCCGTGGAAGTGTTGATTTGA 1383 0.4989 MARRIMGFSPNRGQGPQYPPMVRQRSLYNLSFEDVQRPLLGNTGSESAYLVQEPSCDHHSFTKTSGIGVAWRGIVDHEHMNRSVETLLNEPTLGESTLDHFLANAGVINVADQNTNVHTLPPMVIDSIHQQHWLQIPSVSTHQPHHHHHHQSQIIGNSQDFSVSNNSFYDSQLSYSENSAGIPMSPSYSYSSKTSLFRKRKHSNDEMLEKAVERRQKRMAKNRESAARSRAKKQAYTNEIKNTILNRPQPSSAVLNRPAIWGFTAKTTTYQKCTSQKLHSTVYNINKRHHQQIRSFAVAVGTEDRVPQIVTVPEAEATQSPLREKRAMGFAIWASRSGALSEAEAEAEAAVTVARWRNPISGRGRGRGRDLEEPATQRSRSGALSEADAAVTVARWRNPISGRGRDLEEPATQRSRSGAVDETRDAEAAVEEVEEPATQRKNGEQEEGEAEEGEAVEVLI 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4706g00001 460 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 217 232 IPR004827 GO:0003700|GO:0006355
Vium4706g00001 460 MobiDBLite consensus disorder prediction 215 238 - -
Vium4706g00001 460 Gene3D - 212 247 - -
Vium4706g00001 460 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 22 243 IPR043452 GO:0003700|GO:0045893
Vium4706g00001 460 MobiDBLite consensus disorder prediction 418 447 - -
Vium4706g00001 460 MobiDBLite consensus disorder prediction 1 20 - -
Vium4706g00001 460 MobiDBLite consensus disorder prediction 359 460 - -
Vium4706g00001 460 CDD bZIP_plant_BZIP46 214 240 - -
Vium4706g00001 460 SMART brlzneu 210 279 IPR004827 GO:0003700|GO:0006355
Vium4706g00001 460 MobiDBLite consensus disorder prediction 215 230 - -
Vium4706g00001 460 SUPERFAMILY Leucine zipper domain 214 244 IPR046347 GO:0003700|GO:0006355
Vium4706g00001 460 MobiDBLite consensus disorder prediction 187 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4706g00001 Vium-Chr4706 4720 13230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4706g00001 21 241 bZIP Transcription Factor Family AT2G41070 30.417 4.47e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium4706g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4706g00001 K14432 - gmx:100808654 170.629