Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4703g00010 ATGGAGGGGTTGGAGCCAAAGGTGGTGATGAGGGGTGAGAGGTTGAAGAGGGATATGGTAGATTGTGGTGATAACCAAAAAGGGTACGTGGAGCTTCGGCAGGAGAAGAAGAAGAAGAAGAAAGGCGAGGAAGGGAAGAAAGGGTGTGTTAATGGTGGCATGCTGTGTTGTCAAGCGGAGAAGTGCAACGCAGATCTGCATGAGGCCAAGCAATACCACCGGAGGCACAAGGTGTGTGAGTGTCATGCCAAGGCTCAGGTTGTGCTTGTTCATGGCACCAAACAACGGTTCTGTCAGCAATGTAGCAGGTTTGGGAGATTCCACGAGTTGTCAGAATTTGATGATGCAAAAAGAAGTTGCCGCAGGCGTTTGGCTGTACACAATGAACGGAGGAGAAAGAACTCTTCTGATCAATCTCAAGCAGAAGGGTCAAGCCACCACAAAGGGTCAGAGGTCCCTCAAATGAAGGACATTGCTTGTGGTCAGGCTAATGATAGGGGAAGAACTCATATAACGATACAAGAAAATTCTGCTTACAAAAAGTTTCAAATTAGATAA 558 0.4713 MEGLEPKVVMRGERLKRDMVDCGDNQKGYVELRQEKKKKKKGEEGKKGCVNGGMLCCQAEKCNADLHEAKQYHRRHKVCECHAKAQVVLVHGTKQRFCQQCSRFGRFHELSEFDDAKRSCRRRLAVHNERRRKNSSDQSQAEGSSHHKGSEVPQMKDIACGQANDRGRTHITIQENSAYKKFQIR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4703g00010 185 Gene3D - 52 121 IPR036893 GO:0003677|GO:0005634
Vium4703g00010 185 Pfam SBP domain 57 133 IPR004333 GO:0003677
Vium4703g00010 185 SUPERFAMILY SBT domain 55 137 IPR036893 GO:0003677|GO:0005634
Vium4703g00010 185 ProSiteProfiles Zinc finger SBP-type profile. 54 134 IPR004333 GO:0003677
Vium4703g00010 185 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 145 IPR044817 GO:0003677
Vium4703g00010 185 MobiDBLite consensus disorder prediction 126 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4703g00010 Vium-Chr4703 91137 93632 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4703g00010 45 144 SBP-box Gene Family AT1G53160 61.765 4.49e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium4703g00010 SBP 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4703g00010 - - vum:124838879 376.326