Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4703g00008 ATGGAGGGGTTGGAGCCAAAGGTGGTGATGAGGGGTGAGAGGTTGAAGAGGGATATGGTAGATTGTGGTGATAACCAAAAAGGGTACGTGGAGCTTCGGCAGGAGAAGAAGAAGAAGAAGAAAGGCGAGGAAGGGAAGAAAGGGTGTGTTAATGGTGGCATGCTGTGTTGTCAAGCGGAGAAGTGCAACGCAGATCTGCATGAGGCCAAGCAATACCACCGGAGGCACAAGGTGTGTGAGTGTCATGCCAAGGCTCAGGTTGTGCTTGTTCATGGCACCAAACAACGGTTCTGTCAGCAATGTAGCAGATTCCACGAGTTGTCAGAATTTGATGATGCAAAAAGAAGTTGCCGCAGGCGTTTGGCTGTACACAATGAACGGAGGAGAAAGAACTCTTCTGATCAATCTCAAGCAGAAGGGTCAAGCCACCACAAAGGGTCAGAGGTCCCTCAAATGAAGGACATTGCTTGTGGTCAGGCTAATGATAGGGGAAGAACTCATATAACGATACAAGAAAATTCTGCTTACAAAAAGTTTCAAATTAGATAA 549 0.4699 MEGLEPKVVMRGERLKRDMVDCGDNQKGYVELRQEKKKKKKGEEGKKGCVNGGMLCCQAEKCNADLHEAKQYHRRHKVCECHAKAQVVLVHGTKQRFCQQCSRFHELSEFDDAKRSCRRRLAVHNERRRKNSSDQSQAEGSSHHKGSEVPQMKDIACGQANDRGRTHITIQENSAYKKFQIR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4703g00008 182 ProSiteProfiles Zinc finger SBP-type profile. 54 131 IPR004333 GO:0003677
Vium4703g00008 182 Pfam SBP domain 57 130 IPR004333 GO:0003677
Vium4703g00008 182 MobiDBLite consensus disorder prediction 123 152 - -
Vium4703g00008 182 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 142 IPR044817 GO:0003677
Vium4703g00008 182 Gene3D - 52 118 IPR036893 GO:0003677|GO:0005634
Vium4703g00008 182 SUPERFAMILY SBT domain 55 134 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4703g00008 Vium-Chr4703 91137 95225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4703g00008 45 141 SBP-box Gene Family AT1G53160 63.636 2.73e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium4703g00008 SBP 2.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4703g00008 - - vum:124838879 364.385