Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4703g00007 ATGCCTGCCCAGAAGCGCTCCCTACCCGACTCCCTCGACGAAGGGGACACTTCGCACCACAACCTCTTCCATTCTCGACATGCGAAGCAACAACTGCAACAACATCAGGACCAGTCGCACGAGCACGACGCGGATCACCACCATGAAGAAGAGGAACAAGAGGAAGAAGAAGAAGGGGACGGAGAAGGAGAAGAAGATGATGACGAGGAAGAAGAAGAAGACGAAGAAGTAGAAGAAGCGGCGCATGATAACGACGGCAAGGAAACGCCACAGGATTCCGACGAAACCCCATCTTCTGGCTCTGAAGAAAAACCTGAATTTGTGTATGTAGAACTTTTGGAAATACGTAAAGATGTCCAATGTCCAATTTGCCTTGGCATTATCAAGAAGACAAGAACTGTCATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGAATAATGAATGTCCGGCCTGCCGCACACATTGTGCCAGTCGCCGTTCGCTGAGAGATGATCCAAATTATGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTACGAAGAAGAGGAGCTAGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATAGCAAAAGTAGTTCAACGACAATCAGAAGCACTTGTTAAGAGACGGAAAGATACACCAGGAGTATTTCTAACAAGATCACAGCGTAATCAACGAAACATTCATTCTAGGAGACAAAGTCAAACAATTGAAGGATCGGAAGACAATGAGGAGGACAACGACAATAATGAAAAGGATTCATCTTCAGCCGATGAACGAAGTACAGAACACAGGCAGAAAAGGCGAAAGAGATGGGCTAGAGTTCGCCCCTCTCAACCCTCATCATCTATGGCAAGTCCAGATGGAGGCAATGATAGTGACATGGATATAAGTAGAGAAAATCGTGGAATTTCAAGGCAGGTGTCAAAACATAGAAAGCTTACTTGGGGAAGAGGTGGTTTCAGAAGTCACACACGACATGGCAGTGGTGGTGGTAGCAATAGCAAAAGTTCTCGCAGTAGTCGATTGTCTAAGTTTGTTGATCATCTAAGAAGCTTGGATGAAAACACTAATGAGTTTGACGTCCGTCTCATGCTTGTTTCTCTTGATCATCAAAATACACCAAGTTTGCCACAACCTTACCTTTGCTGTCGACCAACTTTGTCTGTGGAGCACCTTTACGAATATGTTGCTCGTCAGACACCTTTTCCAGTTGAAGGAATCGAGATACTGGCAGTCAAAGGATGCCACAGCACAAATCGTGACAAGTCAGCTGATGAGAATTCAGCCCTCATATATGATGAGCTATCGACGCTGGTTATAGAGCCACACAAAGATGAACTGGAAATTTTACAAGAACACGAGACTCTGGCAGGGCTTAGATCCAAATGCATATCCAAGATGGGGCATTTGATTCTTGCATACAGGCGGAAGGAAGTATCATAG 1497 0.4502 MPAQKRSLPDSLDEGDTSHHNLFHSRHAKQQLQQHQDQSHEHDADHHHEEEEQEEEEEGDGEGEEDDDEEEEEDEEVEEAAHDNDGKETPQDSDETPSSGSEEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDTPGVFLTRSQRNQRNIHSRRQSQTIEGSEDNEEDNDNNEKDSSSADERSTEHRQKRRKRWARVRPSQPSSSMASPDGGNDSDMDISRENRGISRQVSKHRKLTWGRGGFRSHTRHGSGGGSNSKSSRSSRLSKFVDHLRSLDENTNEFDVRLMLVSLDHQNTPSLPQPYLCCRPTLSVEHLYEYVARQTPFPVEGIEILAVKGCHSTNRDKSADENSALIYDELSTLVIEPHKDELEILQEHETLAGLRSKCISKMGHLILAYRRKEVS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4703g00007 498 CDD RING-HC_RING1-like 118 183 - -
Vium4703g00007 498 ProSitePatterns Zinc finger RING-type signature. 137 146 IPR017907 -
Vium4703g00007 498 MobiDBLite consensus disorder prediction 9 23 - -
Vium4703g00007 498 SUPERFAMILY RING/U-box 107 175 - -
Vium4703g00007 498 PANTHER OS11G0578200 PROTEIN 34 496 IPR044592 -
Vium4703g00007 498 SMART ring_2 121 160 IPR001841 -
Vium4703g00007 498 MobiDBLite consensus disorder prediction 82 104 - -
Vium4703g00007 498 MobiDBLite consensus disorder prediction 50 81 - -
Vium4703g00007 498 MobiDBLite consensus disorder prediction 344 358 - -
Vium4703g00007 498 MobiDBLite consensus disorder prediction 30 49 - -
Vium4703g00007 498 MobiDBLite consensus disorder prediction 218 358 - -
Vium4703g00007 498 MobiDBLite consensus disorder prediction 234 251 - -
Vium4703g00007 498 ProSiteProfiles Zinc finger RING-type profile. 121 161 IPR001841 -
Vium4703g00007 498 Pfam Zinc finger, C3HC4 type (RING finger) 120 160 - -
Vium4703g00007 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 184 IPR013083 -
Vium4703g00007 498 MobiDBLite consensus disorder prediction 310 324 - -
Vium4703g00007 498 Coils Coil 187 218 - -
Vium4703g00007 498 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4703g00007 Vium-Chr4703 60608 82547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4703g00007 114 184 C3H Transcription Factor Family AT3G23060 35.135 2.82e-07 51.2