Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4703g00006 ATGAGCAGTGTCTGTTCCGACCAGCACAAGTTTCACCCCTCTCGTCAATTCCTCTCTCCCAACAAAACCCCCAGAGAGATTGACGTCCCTCCAAGGAAGCTCCTCACTTGCCGTGCTGCTGCTGCATGCGGTGGCTCTGAGTTGTTTTCTGACGACACCATGCTGCAAAAGTTCCTTCCTTCCAACAACCTTGATGACTCCGATGAGGATGACCCTTACTCCGCCGACCACTTCAGGATGTTTGAGTTCAAGGTCCGCCGGTGCACTCGCAGCAGGAGTCATGACTGGACTGACTGCCCTTTTGCTCATCCCGGAGAAAAGGCTCGCCGCCGTGACCCTCGGCGGTATCACTACTCGGGAACTGTGTGTCCTGAATATCGTCGTGGAGGGTGCAATCGTGGTGATGCATGTGAATTCGCTCATGGAGTATTTGAATGCTGGCTGCACCCTGCAAGATACAGGACAGAGGCCTGTAAGGATGGAAAGAACTGCAAGAGAAAGGTTTGTTTCTTTGCACACACACCTCGCCAGCTGAGAATTTTACCGGTAACTTCTCCTTCTTCGAATGACATTTCATGCAAGAAGAACATTAACAATCTCTTCAACCATGCTTCAAGATCCAACAACAACGGCTGTTGTGTTTTTTGCCATTGTGTTTCTTCTTCCTCTTCTTCTTCCACCGCTTCTCCAACTTCAACCCTCTTCAACATGTCTCATTACTCGCCACCGCTATCTCCATCCTCCTCCTCCTCCTCACCACCTCCTTCTCCCTTGAAACCCCGAAAAGGGGTTTCTGTTTCTCCAATTTCCCTATATGGTGCTGCGAATGTAAACCCTCGTCATGGGGTGGTGAGTTACAAAGAAGCCTTCGCTGAATTTGTGAACTCCTTGGAGGGGTTGAGTTTGAACGAGGGTTCTCCTGTTTCTGGTGCCAAAACATTGAACTTGCCTTGGATTGATGTTTCTCTGAACTGTGAGGAACAACAGCGACAACCGCTCATTGCTTCTTCTTTTGGCTGCGAAGATCAGCAGAAGTTTATTTTTTCACCATCCTCCACTCAGACACCCACAAATGTTGCGTTTTGCAGCAACAGATTCACAGGCAACAACAACAACAACGTTGTCGGTGCTGACTCAAATGTCCCAGATCTTGCGTGGGTAAACGAGTTGCTGATGTAG 1179 0.4919 MSSVCSDQHKFHPSRQFLSPNKTPREIDVPPRKLLTCRAAAACGGSELFSDDTMLQKFLPSNNLDDSDEDDPYSADHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCNRGDACEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSPSSNDISCKKNINNLFNHASRSNNNGCCVFCHCVSSSSSSSTASPTSTLFNMSHYSPPLSPSSSSSSPPPSPLKPRKGVSVSPISLYGAANVNPRHGVVSYKEAFAEFVNSLEGLSLNEGSPVSGAKTLNLPWIDVSLNCEEQQRQPLIASSFGCEDQQKFIFSPSSTQTPTNVAFCSNRFTGNNNNNVVGADSNVPDLAWVNELLM 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4703g00006 392 MobiDBLite consensus disorder prediction 1 21 - -
Vium4703g00006 392 Gene3D - 117 181 - -
Vium4703g00006 392 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Vium4703g00006 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Vium4703g00006 392 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Vium4703g00006 392 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Vium4703g00006 392 PANTHER UNKEMPT FAMILY MEMBER 36 391 IPR045234 -
Vium4703g00006 392 MobiDBLite consensus disorder prediction 1 25 - -
Vium4703g00006 392 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4703g00006 Vium-Chr4703 54834 56300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4703g00006 63 179 C2H2 Transcription Factor Family AT5G07500 64.957 1.66e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium4703g00006 zf-CCCH 2.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4703g00006 K23047 - gmx:100787049 588.956