Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4703g00004 ATGCGGTTGTTTCCCCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACCATTCTTCAGTCATGTTACTTGAGAAACACAGAGTGGGCTTGTGGAGTGGCTGTCTATACAGGTAATGAAACCAAAATGGGCATGAGTAGAGGTATACCAGAACCAAAGCTCACTGCTATGGACGCCATGATTGACAAGTTGACTGGCGCTATTTTTATATTCCAAATAGTTGTTGTTCTTGTTCTTGGCATAGCAGGGAATGTTTGGAAGGAGACAGAAGCTAAGAAGCAATGGTATGTTCTTTACCCTCATGAAGGTCCGTGGTATGAACTGTTGGTCATCCCTTTGCGGTTTGAGCTTCTCTGTTCCATCATGATACCCATTTCAATTAAGGTATCTCTGGATTTGGTGAAGAGCTTGTATGCAAAATTTATTGACTGGGACAATCAGATGATTGACCATGAGACTAGCATTCCATCCCATGCAACAAATACAGCGATAAGTGAGGACCTGGGACAAGTTGAGTACATTTTGACTGACAAAACAGGAACACTTACTGAGAATAAGATGATATTTAGAAGATGTTGTATTGGTGGCAATTTCTACGGAAATGAAAATGGAGATGCATTGAAGGATGTAGAGCTTATCAATGCTGTGTCCAGTGGTTCTTCAGATGTTGTACGATTTCTTACAATTATGGCAATATGTAATACTGTCATACCTACGCGAAGCAAAACTGGAGATATCTTGTATAAAGCACAGTCTCAAGATGAGGATGCCCTTGTTCAGGCTGCTGCTCAATTGCATATGATTTACTTTAATAAGAGTGGAAATATTCTTGAAGTCAACTTCAACTCTTCAATACTTCAGTATGAAGTCCTGGAAATCCTAGAGTTCACCTCTGATAGGAAAAGAATGTCAGTAGTATTGAAGGATTGCCAAAATGGAAAGATCCTTCTATTGTCGAAAGGAGCAGATGAGGCTATTCTTCCGTTTGCTCGTGCGGGGCAGCAGACTCGACATTTCATTGAAGCTGTGGAGCAGTATGCTCACTTGGGATTGCGTACATTATGTTTGGGTTGGCGTGAGTTAAAAAAAGATGAATATAGAGAATGGTCTTTGATGTTTAAAGAGGCCAGCAGCACTTTGGTTGATAGGGAGTGGAGAGTAGCTGAGGTCTGTCAACGAGTAGAACATGACTTGGAAATTCTTGGTGTAACAGCAATAGAGGATCGTTTACAGGATGGAGTGCCTGAAACGATAGAAACTCTAAGAAAAGCTGGAATAAATTTTTGGATGCTAACTGGAGATAAGCAGAATACAGCAATACAAATCGCTCTGTCATGTAATTTTATTTCCCCAGAACCAAAGGGACAGCTTCTATCAATTGATGGAAAAACAGAGGAAGAGGTTTGTAGGAGTTTAGAAAGAGTGCTACGAACTATGCGGATAACTACCTCAGAACCCAAGGATGTGGCTTTTGTTGTTGATGGTTGGGCACTTGAGATTGCACTTACTCACTACCGTAAAGCTTTCACTGAGCTGGCAGTTTTGTCGAGGACCGCTATATGTTGTCGTGTGACACCATCACAAAAAGCACAGCTTGTTCAGATCTTAAAATCATGTGATTATCGAACATTGGCTATTGGTGATGGTGGAAATGATGTAAGGATGATACAACAAGCTGATATTGGTGTGGGTATCAGTGGCAGAGAAGGATTGCAGGCAGCAAGAGCAGCTGATTACAGTATTGGAAAGTTTAGATTCCTGAAGAGATTGATTCTGGTCCATGGCCGCTACTCATACAACCGCACAGCATTTCTTTCTCAATATTCATTCTACAAGTCCCTACTGATTTGCTTCATCCAAATCTTTTTTTCATTTATTTCAGGTGTCTCTGGAACTAGCCTCTTCAATTCTGTTAGCTTGATGGCTTACAATGTTTTCTACACCAGTGTCCCTGTTCTAGTCAGCGTGCTTGACAAAGATCTTAGTGAGGAAACTGTAATGCAACATCCGCAAATTTTATTTTACTGCCAAGCGGGAAGGCTTCTGAATCCTAGTACATTTGCTGGATGGTTTGGGCGATCTCTGTTCCATGCAATAGTTGTATTTGTGATAAGCATACATGCCTATGCTTATGATAAAAGTGAAATGGAAGAGGTTTCAATGGTTGCACTTTCGGGTTGTATATGGTTACAGGCTTTTGTAGTGACAATGGAGACCAATTCCTTTACTATATTGCAACATATGGCTATATGGGGTAATTTGGCTGCCTTTTATGTCATTAACTGGATCTTCAGCGCTCTTCCTTCATCAGGGATGTATACAATTATGTTCAAGTTGTGTCATCAGCCGTCATATTGGATAACAGTATCTCTCATGGTTGCGGCAGGGATGGGTCCCATTCTAGCTATCAAGTACTTCCGATATACATATAGACCGAGCAAAATCAATACATTGCAGCAAGCTGAACGTGTGGGCGGGCCAATTTTGTCTCTTGGCCCCATTGAGCCTCAGCCGAGATCTATAGAGAAAGATGTTTCTACCTTGTCAATAACACAACCCAAAAACAGAAATCCTGTGTATGAACCACTGTTGTCAGATTCCCCGAATGCTACCAGAAGATCTTTCGGATCAGGAACACCATTTGATTTTTTCCAGTCACAATCAAGATCATCTCTGTCTAACTACACAAGAAAGGACAACTGA 2712 0.4089 MRLFPPFIDNDICPLTIKNTILQSCYLRNTEWACGVAVYTGNETKMGMSRGIPEPKLTAMDAMIDKLTGAIFIFQIVVVLVLGIAGNVWKETEAKKQWYVLYPHEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDNQMIDHETSIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCIGGNFYGNENGDALKDVELINAVSSGSSDVVRFLTIMAICNTVIPTRSKTGDILYKAQSQDEDALVQAAAQLHMIYFNKSGNILEVNFNSSILQYEVLEILEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPFARAGQQTRHFIEAVEQYAHLGLRTLCLGWRELKKDEYREWSLMFKEASSTLVDREWRVAEVCQRVEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEEEVCRSLERVLRTMRITTSEPKDVAFVVDGWALEIALTHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSVPVLVSVLDKDLSEETVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFVISIHAYAYDKSEMEEVSMVALSGCIWLQAFVVTMETNSFTILQHMAIWGNLAAFYVINWIFSALPSSGMYTIMFKLCHQPSYWITVSLMVAAGMGPILAIKYFRYTYRPSKINTLQQAERVGGPILSLGPIEPQPRSIEKDVSTLSITQPKNRNPVYEPLLSDSPNATRRSFGSGTPFDFFQSQSRSSLSNYTRKDN 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4703g00004 903 FunFam Phospholipid-transporting ATPase 401 588 - -
Vium4703g00004 903 SUPERFAMILY HAD-like 173 604 IPR036412 -
Vium4703g00004 903 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 185 372 IPR023299 GO:0000166
Vium4703g00004 903 SFLD Haloacid Dehalogenase 161 600 - -
Vium4703g00004 903 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 815 IPR023298 -
Vium4703g00004 903 Gene3D - 401 589 IPR023214 -
Vium4703g00004 903 FunFam Phospholipid-transporting ATPase 248 391 - -
Vium4703g00004 903 NCBIfam phospholipid-translocating P-type ATPase 224 822 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium4703g00004 903 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 13 826 - -
Vium4703g00004 903 MobiDBLite consensus disorder prediction 855 897 - -
Vium4703g00004 903 Pfam Cation transport ATPase (P-type) 235 330 - -
Vium4703g00004 903 ProSitePatterns E1-E2 ATPases phosphorylation site. 180 186 IPR018303 -
Vium4703g00004 903 Gene3D - 233 390 IPR023299 GO:0000166
Vium4703g00004 903 NCBIfam HAD-IC family P-type ATPase 516 633 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4703g00004 903 NCBIfam HAD-IC family P-type ATPase 398 461 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4703g00004 903 SFLD p-type atpase 161 600 IPR044492 -
Vium4703g00004 903 PRINTS P-type cation-transporting ATPase superfamily signature 549 568 - -
Vium4703g00004 903 PRINTS P-type cation-transporting ATPase superfamily signature 427 437 - -
Vium4703g00004 903 PRINTS P-type cation-transporting ATPase superfamily signature 178 192 - -
Vium4703g00004 903 Pfam Phospholipid-translocating P-type ATPase C-terminal 577 816 IPR032630 -
Vium4703g00004 903 MobiDBLite consensus disorder prediction 855 903 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4703g00004 Vium-Chr4703 32387 48752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4703g00004 1 903 Primary Pumps ATPases AT5G44240 84.879 0.0 1617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4703g00004 K01530 - gmx:100786505 1706.81