Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4703g00001 ATGAAGCGTTATGTTTATATTGATGATGATGAATCATCTCATGATATATACTGTGATAATCGTATATCAAACAGAAAATATACAGTATTAAACTTTCTTCCAAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCCTACAGTTATGGCCTCTCATTACTCCAGTAAATCCTGCCAGTACATGGGGTCCGCTTATCTTTATTTTTGCTGTCTCTGCATCAAAAGAGGCTTGGGATGATTACAATAGATATCTTTCAGACAAAAAGGCAAATGAGAAGGAAGTCTGGGTTGTGAAGAAGGGCATCAAGAAACATATTGAAGCCCAGGATATTCATGTAGGTAATATAGTATGGCTACGTGAAAATGATGAAGTGCCTTGTGACCTTGTTTTAATTGGTACCTCTGATCCTCAAGGAGTTTGCTATGTAGAGGTAATTATGTTGTGA 471 0.3673 MKRYVYIDDDESSHDIYCDNRISNRKYTVLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSASKEAWDDYNRYLSDKKANEKEVWVVKKGIKKHIEAQDIHVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVEVIML 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4703g00001 156 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 152 - -
Vium4703g00001 156 Gene3D - 78 156 - -
Vium4703g00001 156 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Vium4703g00001 156 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 118 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4703g00001 Vium-Chr4703 10195 15922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4703g00001 1 156 Primary Pumps ATPases AT5G44240 87.821 2.74e-96 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4703g00001 K01530 - vum:124838875 330.872