Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4698g00005 ATGGCTCCCGGGACCGGTGTCTTTGCAGAGATTTTGGATGGAGATGTGTACAAGTACTATGCCGATGGGGAGTGGAAGAAAGCTTCTTCTGGGAAAACTGTTGCCATCATCAACCCCACTACAAGAAAGACTCAATACAAAGTTCAAGCTTGTTCACAAGAGGAGGTTAATAAGGTCATGGACTTGGCAAAATCTGCACAAAAATTATGGGCAAAGACCCCACTGTGGAAGCGGGCTGAACTTCTTCACAAGGCAGCTGCTATCCTTAAAGAGCACAAGGCTCCAATTGCAGAGTGTCTGGTGAAAGAAATAGCAAAGCCAGCCAAAGATGCTGTTACAGAGGTTGTAAGATCTGGTGATCTGATTTCTTACTGTGCTGAAGAAGGGGTAAGGATTCTGGGAGAGGGAAAGTTCTTGGTGTCGGATAGCTTTCCTGGAAATGAAAGGACAAAATATTGCCTCACATCCAAGATTCCACTTGGAGTGATTTTAGCCATTCCACCATTTAACTACCCTGTTAATCTTGCTGTCTCCAAAATTGCTCCTGCACTGATTGCTGGAAACTCCATTGTGCTCAAGCCTCCGACTCAGGGAGCCGTTTCTGGTCTGCACATGATTCACTGCTTTCACTTGGCTGGTTTTCCCAAAGGGCTAATCAACTGTGTCACTGGCAAAGGCTCAGAAATTGGTGACTTCCTAACAATGCATCCAGGAGTGAACTGTATAAGCTTTACTGGTGGAGATACTGGCATTGGAATTTCAAAGAAGGCAGGCATGATTCCTCTGCAAATGGAGTTGGGAGGAAAAGATGCCTGCATTGTACTTGAGGATGCTGACCTGGATTTGGTTGCAATAAACATTATAAAAGGAGGCTTTTCATACAGTGGGCAGAGGTGCACTGCTGTTAAGGTTGTCCTGGTAATGGAATCTGTTGCCGATGCTTTGGTTGAGAAAGTGAAGGCTAATGTGGCAAAACTAACAGTCGGACCACCAGAGGATGACAGTGATATCACTCCAGTTGTGTCAGAATCATCAGCCAACTACATTGAAGGCCTGGTCTTGGATGCTAAGGAGAAAGGAGCAACATTCTGCCAGGAGTACAAAAGAGAAGGCAATCTCATTTGGCCTTTGCTACTGGACCATGTGAGGCCAGACATGAGAATTGCATGGGAAGAGCCATTTGGACCAGTTTTGCCAGTAATTAGGATAAATTCAGTTGAAGAAGGAATCCATCATTGTAATGCCAGCAACTTTGGACTTCAGGGATGTGTGTTCACAAAGGATGTAAACAAAGCAATAATGATCAGTGATGCAATGGAAACAGGAACAGTTCAGATAAATTCTGCCCCAGCTCGTGGACCAGACCATTTTCCCTTTCAGGGTATAAAGGACAGTGGCATTGGATCTCAAGGGATTACCAACAGCATAAACATGATGACCAAGGTTAAAACCACTGTGATCAACTTACCCAGCCCTTCCTACACCATGGGCTAG 1494 0.4505 MAPGTGVFAEILDGDVYKYYADGEWKKASSGKTVAIINPTTRKTQYKVQACSQEEVNKVMDLAKSAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSGLHMIHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIGISKKAGMIPLQMELGGKDACIVLEDADLDLVAINIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKANVAKLTVGPPEDDSDITPVVSESSANYIEGLVLDAKEKGATFCQEYKREGNLIWPLLLDHVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDVNKAIMISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4698g00005 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 23 484 IPR016162 GO:0016491
Vium4698g00005 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 268 458 IPR016163 GO:0016620
Vium4698g00005 497 CDD ALDH_F11_NP-GAPDH 16 488 - -
Vium4698g00005 497 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 292 303 IPR016160 GO:0016491
Vium4698g00005 497 Pfam Aldehyde dehydrogenase family 25 484 IPR015590 GO:0016491
Vium4698g00005 497 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 264 271 IPR029510 GO:0016491
Vium4698g00005 497 PANTHER ALDEHYDE DEHYDROGENASE 1 496 - -
Vium4698g00005 497 SUPERFAMILY ALDH-like 17 488 IPR016161 GO:0016491
Vium4698g00005 497 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 268 458 - -
Vium4698g00005 497 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 23 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4698g00005 Vium-Chr4698 27575 31781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4698g00005 4 497 Aldehyde Dehydrogenase Gene Family AT2G24270 90.688 0.0 943