Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4698g00004 ATGCAACCTTGTAGTAGAGAAATGCAAGGCGCTAACAATAACTCTCTCTTTAACAATCAACAACAGATCCACTTTGATGCAACTTCAAACGAGGATTTCCTTAAGCAAATGCTCTCTAATCTCCCTTCGTCTTCTCCATGGACACTCGACCCCAAACACAACCCCTTATGGGACCCTAATTCCGACGAAACCACGCCGGAAAACAACGTCGTTTTCCCCTACGACCTCGAACAGGCCAACTTGGCCTCCAAGTTTCGCAACCACCAGATCACCGATGACAAAGCCTCCGCTCTCATGCTCCAACATCACCATCAACTCCTTCTCTCCTCCGCCGCTGCCAATTCCCCCATCCTCCAAATGCCCGTCTCCTCTCTTAACGACGTCGTTCACGCCTCCTCCTTCAAATCTCCTGCTTCAAACGCTGACCCTGTTCAACCTCTCTACAACGCCTTCTCCGCCTCTCTCCAAGGTGCCGCCCAACCCTCCAACCAAACTCACCATTTTCAACTTCCTCAGGTACAGAGTTTTGGAGCTTCGGCTCCGGCTACTGGTGGTGGCGCGGGTTCCGGGCAGCCGAAGCAGAGGATTAGAGCTAGGAGAGGTCAAGCCACCGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTGCAGGAACTGGTTCCCAACGCCAACAAGACTGATAAGGCCTCCATGTTGGATGAGATCATCGATTATGTGAAGTTCCTCCAGCTCCAAGTCAAGGTTTTAAGCATGAGCAGATTGGGAGGTGCAGCGGCTGTGGCACCCCTTGTTGCTGATATATCTTCTGAGGGAGGCGCGGACTGCGTTCAACAAAAACGCAACAACACCAACGGAAACTCAAACGGCAACCATGCTTCTTCAAACGACACCCTCACCACGACGGAGCAACAGGTGGCGAAGCTCATGGAGGAAGACATGGGATCCGCCATGCAGTACCTGCAGGGGAAAGGTCTCTGCCTTATGCCGATTTCCCTGGCCACCGCCATCTCCAAAGCCACGTGTCACACCAGAAACCCTTTCACCAACGGTGATGGGCCCTCTTCTCCCGGAATATCCGCGCTCACCCTGCACTCGTCCACTCTCAGTAACGGCCTCGTCAAAGACACCGCCTCCGTTTCCAAGTCCTGA 1176 0.5366 MQPCSREMQGANNNSLFNNQQQIHFDATSNEDFLKQMLSNLPSSSPWTLDPKHNPLWDPNSDETTPENNVVFPYDLEQANLASKFRNHQITDDKASALMLQHHHQLLLSSAAANSPILQMPVSSLNDVVHASSFKSPASNADPVQPLYNAFSASLQGAAQPSNQTHHFQLPQVQSFGASAPATGGGAGSGQPKQRIRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGADCVQQKRNNTNGNSNGNHASSNDTLTTTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHTRNPFTNGDGPSSPGISALTLHSSTLSNGLVKDTASVSKS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4698g00004 391 FunFam Transcription factor bHLH66 199 264 - -
Vium4698g00004 391 MobiDBLite consensus disorder prediction 176 209 - -
Vium4698g00004 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 262 IPR036638 GO:0046983
Vium4698g00004 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Vium4698g00004 391 MobiDBLite consensus disorder prediction 284 307 - -
Vium4698g00004 391 MobiDBLite consensus disorder prediction 44 65 - -
Vium4698g00004 391 Gene3D - 197 259 IPR036638 GO:0046983
Vium4698g00004 391 SMART finulus 208 257 IPR011598 GO:0046983
Vium4698g00004 391 Pfam Helix-loop-helix DNA-binding domain 207 252 IPR011598 GO:0046983
Vium4698g00004 391 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4698g00004 Vium-Chr4698 17755 21115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4698g00004 178 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.825 6.85e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4698g00004 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4698g00004 - - gmx:100801457 468.774