Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4698g00003 ATGCAACCTTGTAGTAGAGAAATGCAAGGCGCTAACAATAACTCTCTCTTTAACAATCAACAACAGATCCACTTTGATGCAACTTCAAACGAGGATTTCCTTAAGCAAATGCTCTCTAATCTCCCTTCGTCTTCTCCATGGACACTCGACCCCAAACACAACCCCTTATGGGACCCTAATTCCGACGAAACCACGCCGGAAAACAACGTCGTTTTCCCCTACGACCTCGAACAGGCCAACTTGGCCTCCAAGTTTCGCAACCACCAGATCACCGATGACAAAGCCTCCGCTCTCATGCTCCAACATCACCATCAACTCCTTCTCTCCTCCGCCGCTGCCAATTCCCCCATCCTCCAAATGCCCGTCTCCTCTCTTAACGACGTCGTTCACGCCTCCTCCTTCAAATCTCCTGCTTCAAACGCTGACCCTGTTCAACCTCTCTACAACGCCTTCTCCGCCTCTCTCCAAGGTGCCGCCCAACCCTCCAACCAAACTCACCATTTTCAACTTCCTCAGAGTTTTGGAGCTTCGGCTCCGGCTACTGGTGGTGGCGCGGGTTCCGGGCAGCCGAAGCAGAGGATTAGAGCTAGGAGAGGTCAAGCCACCGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTGCAGGAACTGGTTCCCAACGCCAACAAGACTGATAAGGCCTCCATGTTGGATGAGATCATCGATTATGTGAAGTTCCTCCAGCTCCAAGTCAAGGTTTTAAGCATGAGCAGATTGGGAGGTGCAGCGGCTGTGGCACCCCTTGTTGCTGATATATCTTCTGAGGGAGGCGCGGACTGCGTTCAACAAAAACGCAACAACACCAACGGAAACTCAAACGGCAACCATGCTTCTTCAAACGACACCCTCACCACGACGGAGCAACAGGTGGCGAAGCTCATGGAGGAAGACATGGGATCCGCCATGCAGTACCTGCAGGGGAAAGGTCTCTGCCTTATGCCGATTTCCCTGGCCACCGCCATCTCCAAAGCCACGTGTCACACCAGAAACCCTTTCACCAACGGTGATGGGCCCTCTTCTCCCGGAATATCCGCGCTCACCCTGCACTCGTCCACTCTCAGTAACGGCCTCGTCAAAGACACCGCCTCCGTTTCCAAGTCCTGA 1170 0.5368 MQPCSREMQGANNNSLFNNQQQIHFDATSNEDFLKQMLSNLPSSSPWTLDPKHNPLWDPNSDETTPENNVVFPYDLEQANLASKFRNHQITDDKASALMLQHHHQLLLSSAAANSPILQMPVSSLNDVVHASSFKSPASNADPVQPLYNAFSASLQGAAQPSNQTHHFQLPQSFGASAPATGGGAGSGQPKQRIRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGADCVQQKRNNTNGNSNGNHASSNDTLTTTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHTRNPFTNGDGPSSPGISALTLHSSTLSNGLVKDTASVSKS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4698g00003 389 SMART finulus 206 255 IPR011598 GO:0046983
Vium4698g00003 389 FunFam Transcription factor bHLH66 197 262 - -
Vium4698g00003 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 260 IPR036638 GO:0046983
Vium4698g00003 389 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 343 - -
Vium4698g00003 389 MobiDBLite consensus disorder prediction 173 208 - -
Vium4698g00003 389 MobiDBLite consensus disorder prediction 282 305 - -
Vium4698g00003 389 MobiDBLite consensus disorder prediction 44 65 - -
Vium4698g00003 389 Gene3D - 195 257 IPR036638 GO:0046983
Vium4698g00003 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Vium4698g00003 389 Pfam Helix-loop-helix DNA-binding domain 205 250 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4698g00003 Vium-Chr4698 17755 21115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4698g00003 176 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.825 5.76e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4698g00003 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4698g00003 - - gmx:100801457 465.307