Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4696g00012 ATGGAACTTTTCCCAGCTCAACCAGACTTGTCCTTACAAATCAGCCCTCCAAACGCCAAACCAACATCAACTTGGAGGAGAAGCACAGAAGAAGACATGGATTTGGGGTTCTGGAAGAGAGCCTTGGACTCGAGAAACTCCATATCATCAATGGCCAAACAAGACTCTTGCGTCGCCCTCTCCCTCTCCAATCCAAAAGCCTCGTCCGATAACTCCAACTCCTCTAACCTCATTCACCGCTTCCAAAACGGTGCCAATAATGCCACCACCAACCCCTTCCAACCCTTTCAGCAGAACCATTACTTCCACCAGCCACTGTTCCAGCCTCAGCACCAAAGCCTCAGCCAAGACCTCGGCTTTCTCAGACCCATTAGAGGAATCCCAGTGTACCAAAACCCTCCTCCTATACCATTCACTCAGCATCACCACCACCACCACCATCTCCCTCTGGAGCCTTCAACCACCGCCCCTTCTTCTATTATTTCCAGCACCAACACTGCTTCTACCCCTTTCCACTCTCAGGCCCTTATGAGATCAAGGTTCTTGTCACGCTTCCCTGCTAAGCGTAGCATGAGGGCTCCCAGGATGCGTTGGACTTCTACCCTCCATGCTCGCTTTGTCCATGCCGTTGAGCTCTTAGGTGGCCACGAAAGGGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTGAAGGATCTCACTTTAGCACATGTGAAGTCTCATTTACAGATGTACCGGACGGTGAAAACTACAGATAGAGCTGCGGCTTCATCAGGGCAATCGGATGTGTATGATAATGGGTCGTCGGGAGATACTTCTGATGACTTAATGTTTGATATAAAATCTTCTCGAAGGTCTGATGTATCCATTAAACAGGGAAGATCAAGTGTTAATCAAGATAAGGATTATCATGGTCTTTGGGGTAACTCTTCCAGGGAAGCTTGGTTGCATGGGAAGACAAAGACTGATTCTGTTGGAAACGTGCCATCTCTTGAGAAGGAAATGGATCCGAAGTGTGTGAGTTATGAGAGAATATCAGATGGAAGCTCATCTTCGAATGTGTCAGGATCAAGCCCGAAGAAGGCTAATTTGGATTTGGAATTCAGCTTGGGGCAGCCACTTTAA 1125 0.48 MELFPAQPDLSLQISPPNAKPTSTWRRSTEEDMDLGFWKRALDSRNSISSMAKQDSCVALSLSNPKASSDNSNSSNLIHRFQNGANNATTNPFQPFQQNHYFHQPLFQPQHQSLSQDLGFLRPIRGIPVYQNPPPIPFTQHHHHHHHLPLEPSTTAPSSIISSTNTASTPFHSQALMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDIKSSRRSDVSIKQGRSSVNQDKDYHGLWGNSSREAWLHGKTKTDSVGNVPSLEKEMDPKCVSYERISDGSSSSNVSGSSPKKANLDLEFSLGQPL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4696g00012 374 MobiDBLite consensus disorder prediction 152 166 - -
Vium4696g00012 374 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 373 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vium4696g00012 374 MobiDBLite consensus disorder prediction 252 277 - -
Vium4696g00012 374 Gene3D - 193 250 - -
Vium4696g00012 374 SUPERFAMILY Homeodomain-like 191 247 IPR009057 -
Vium4696g00012 374 MobiDBLite consensus disorder prediction 318 374 - -
Vium4696g00012 374 MobiDBLite consensus disorder prediction 137 166 - -
Vium4696g00012 374 MobiDBLite consensus disorder prediction 344 362 - -
Vium4696g00012 374 MobiDBLite consensus disorder prediction 252 276 - -
Vium4696g00012 374 FunFam Myb family transcription factor 192 250 - -
Vium4696g00012 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 194 247 IPR006447 GO:0003677
Vium4696g00012 374 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4696g00012 Vium-Chr4696 61600 66710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4696g00012 1 373 G2-like Transcription Factor Family AT4G17695 38.520 2.51e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium4696g00012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4696g00012 - - gmx:100798081 622.468