Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4694g00006 ATGACTCCGCGGCTGGAACACAACAGCGACTCCACCAGCGCTGAGTCTCAGAGATCCCTACCCACACCGTTTCTCACCAAAACCTACCAGCTCGTCGACGATCACACTATCGATGATGTCATTTCCTGGAACGATTCTGGATCATCCTTCATCGTTTGGAACACCACCGTTTTTGCCAGGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGATTCAGAAAAGTTGTACCTGATCGGTGGGAATTTTCCAACGAGTGTTTCCGAAGAGGCCAGAAGCAACTTCTCTGCGAAATTCAGCGTAGGAAGATCCTCTCCTCGTCGCCTCCAGTCGGAGCAACGGCTAGCGTGGCGGTTCCGTCGCCACTGGCGCTCTCCGCGATTCCAATAGTGAAGCCCATCGTGTCGCCGTCGAACTCAACGGAGGAACAGGTGATCTCGTCGAACTCTTCGCCGTCGAGAGTTCCGGCAGAGCTGTTGGACGAGAACGAGCGGCTGAGAAAGGAGAACATTCTTTTGATGAAGGAATTGGAAGAGATGAGATCGCTCTGCAACAACATACTCAATCTCGTGTCGAATTACGCAACCTCTAAAGCGGACGGTGGTACCGATGCGGTAAAGACGCTTGGTTTGATGCCGTCGAAGCGGTGCTCTGGTGAGAACGCGGCGGAGAAGATGAATCCGAAGCTGTTTGGGGTGGCGATTGGTACGAAGCGAGCGAGAGAGGAAGGACGTGGAGCGGAGTATGATACGGTTTTGAGTCTTCATCCGTTCCACGCGGACGTGAAATCTGAACCGTTAGATTTCGAAAGACATGGAGAAAACAGAAGTACTTCGTGGCTAAATCACTGTCGTACAGCAAATGAGAGAGAGTGTGTAATTGATACACGACGTTGTAAAAGCTAG 939 0.5112 MTPRLEHNSDSTSAESQRSLPTPFLTKTYQLVDDHTIDDVISWNDSGSSFIVWNTTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGQKQLLCEIQRRKILSSSPPVGATASVAVPSPLALSAIPIVKPIVSPSNSTEEQVISSNSSPSRVPAELLDENERLRKENILLMKELEEMRSLCNNILNLVSNYATSKADGGTDAVKTLGLMPSKRCSGENAAEKMNPKLFGVAIGTKRAREEGRGAEYDTVLSLHPFHADVKSEPLDFERHGENRSTSWLNHCRTANERECVIDTRRCKS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4694g00006 312 Gene3D - 16 114 IPR036388 -
Vium4694g00006 312 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Vium4694g00006 312 Coils Coil 174 194 - -
Vium4694g00006 312 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4694g00006 312 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4694g00006 312 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4694g00006 312 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4694g00006 312 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 208 IPR027725 -
Vium4694g00006 312 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4694g00006 312 FunFam Heat stress transcription factor B-4 16 114 - -
Vium4694g00006 312 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4694g00006 Vium-Chr4694 71368 72639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4694g00006 14 303 HSF AT5G62020 47.634 7.68e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium4694g00006 HSF_DNA-bind 1.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4694g00006 K09419 - gmx:100780987 473.396