Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4694g00003 ATGCAAAATTCATCTTCCTTCTCCTACTCAAATCAAAGGAAAATGGAGGGCCCCAGTGAGATGGGTCTCATTGGGGAAAATTTTGATGCTGGTTTGATGGGGAGGATGAGGGATGATGAGTATGAAAGCCGCTCTGGAAGTGATAACTTCGATGGTGTATCTGGTGATGATCAGGACGGTGGTGATGATCAGCCACAGAGGAAGAAAAGATACCACAGACATACTCCTCACCAAATTCAAGAGCTTGAGTCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTCAGTAAGAGGCTTGGGTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAACCGACGAACCCAAATGAAGACCCAACTGGAACGCCATGAGAACATAATGCTTAGACAGGAGAATGATAAGCTCAGAGCTGAGAACAGTCTGATGAAGGAAGCAATGTCAAATCCAGTGTGTAACAGCTGTGGTGGGCCAGCGATTCCTGGTCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAGAATGCTCGACTAAAAGATGAGTTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAGCCAATCTCATCAATGACCGGTCCCATGGCTCTACCAACCTCAAATTCTGGTCTGGAACTTGGTATTGGAAGGAGTGGGCTTGGTGGTTCAAGCACTCTCGGCACTCCCTTACCAATGGGACTTGACTTGGGAGATGGAGTATTGGGCACTCAAACTGGAATGCCTGGGATTAGACCATCATTGGGGTTGATGGGAAACGAAGTTCAGCTAGAGAGATCTATGCTTATAGATCTTGCGTTGGCTGCTATGGAGGAATTGCTAAAGATGACTCAGGCAGAGAGCCCTCTTTGGATTAAGAGTTTGGATGGTGAGAAGGAAGTGTTTAATCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCCACTGGTTATGTAACCGAAGCTACAAGAGAAACTGGGATAGTAATCATCAACAGTTTAGCCCTTGTGGAAACTTTGATGGACGCGAATCGATGGGCAGAGATGTTTCCTTCTATGATTGCTAGAGCTATCAACCTCGATGTTATATCCAATGGCATGGGTGGAACAAGAAATGGTGCTCTACAAGTGATGCATGCTGAGGTACAATTGCTTTCACCACTAGTCCCCGTTCGCCAAGTGAGATTCATCCGGTTCTGTAAGCAACATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTATTGATGTTGGTCACGATGCTGCTAATGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGGTGTTCACCAACTTTATCGCCCATTGCTTAGTTCTGGTGTTGGATTTGGTGCTCATAGATGGATCGCCACTCTCCAGAGGCAGTGTGAATGCTTGGCTATCCTCATGTCGTCTTCCATTTCAAGTGATGATCACACAGCATTGAGCCAAGCTGGTCGGAGGAGCATGTTGAAATTGGCACAACGCATGACTAGTAACTTCTGTTCGGGGGTTTGTGCTTCGTCTGCTCGCAAGTGGGACATGCTTCACATTGGGACTCTCGGTGATGACATGAAGGTGATGACTAGGAAAAACGTGGATGACCCCGGTGAGCCTCCGGGGATCGTACTCAGTGCTGCAACTTCTGTTTGGATGCCAGTGTCACGGCAAAGGGTGTTTGATTTTCTGCGTGATGAACGGCTGAGAAGTGAGTGGGACATCTTGTCCAATGGTGGACCGATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAACTGTGTTTCTCTTCTCCGTGCCAACGCTGTTAATGCGAACGATAGCAGCATGCTGATTCTGCAAGAGACATGGATGGACGCGTCGTGCTCGGTGGTGGTATATGCGCCAGTTGACGTGCAATCACTGAACGTGGTAATGAGTGGGGGAGATTCTGCATACGTTGCACTCTTGCCTTCAGGCTTCGCCATTGTCCCCGATGGTCACTGCAACAACAGCACTTGCAATGGGACAATGCAGAAGGGTGGAGGAGGAGAAGACAGCGGCGGAAGCCTTCTGACGGTGGGGTTTCAAATTCTGGTGAACAGTCTGCCAACGGCAAAGCTGACAGTAGAGTCAGTGGACACAGTGAATAACCTGATTTCGTGCACCATTCAGAAGATCAAAGGTGCTCTGAGAGTTGCATAA 2298 0.4756 MQNSSSFSYSNQRKMEGPSEMGLIGENFDAGLMGRMRDDEYESRSGSDNFDGVSGDDQDGGDDQPQRKKRYHRHTPHQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRAENSLMKEAMSNPVCNSCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSMTGPMALPTSNSGLELGIGRSGLGGSSTLGTPLPMGLDLGDGVLGTQTGMPGIRPSLGLMGNEVQLERSMLIDLALAAMEELLKMTQAESPLWIKSLDGEKEVFNHEEYARLFSPCIGPKPTGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQVRFIRFCKQHAEGVWAVVDVSIDVGHDAANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESGVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDMLHIGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRVFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAIVPDGHCNNSTCNGTMQKGGGGEDSGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKGALRVA 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4694g00003 765 MobiDBLite consensus disorder prediction 1 15 - -
Vium4694g00003 765 FunFam Homeobox-leucine zipper protein HDG1 54 141 - -
Vium4694g00003 765 SUPERFAMILY Bet v1-like 270 501 - -
Vium4694g00003 765 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Vium4694g00003 765 SUPERFAMILY Bet v1-like 529 759 - -
Vium4694g00003 765 SMART HOX_1 66 129 IPR001356 GO:0003677
Vium4694g00003 765 SMART START_1 277 501 IPR002913 GO:0008289
Vium4694g00003 765 CDD homeodomain 67 125 IPR001356 GO:0003677
Vium4694g00003 765 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Vium4694g00003 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 762 IPR042160 -
Vium4694g00003 765 FunFam Homeobox-leucine zipper protein GLABRA 2 277 500 - -
Vium4694g00003 765 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Vium4694g00003 765 MobiDBLite consensus disorder prediction 1 75 - -
Vium4694g00003 765 SUPERFAMILY Homeodomain-like 52 125 IPR009057 -
Vium4694g00003 765 Coils Coil 119 154 - -
Vium4694g00003 765 Gene3D - 55 141 - -
Vium4694g00003 765 Pfam START domain 278 501 IPR002913 GO:0008289
Vium4694g00003 765 MobiDBLite consensus disorder prediction 32 46 - -
Vium4694g00003 765 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Vium4694g00003 765 CDD START_ArGLABRA2_like 272 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4694g00003 Vium-Chr4694 18159 23838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4694g00003 20 762 Homeobox Transcription Factor Family AT3G61150 62.450 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4694g00003 START 5e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4694g00003 K09338 - gmx:100785102 1422.14