Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4694g00002 ATGGAGGGCCCCAGTGAGATGGGTCTCATTGGGGAAAATTTTGATGCTGGTTTGATGGGGAGGATGAGGGATGATGAGTATGAAAGCCGCTCTGGAAGTGATAACTTCGATGGTGTATCTGGTGATGATCAGGACGGTGGTGATGATCAGCCACAGAGGAAGAAAAGATACCACAGACATACTCCTCACCAAATTCAAGAGCTTGAGTCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTCAGTAAGAGGCTTGGGTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAACCGACGAACCCAAATGAAGACCCAACTGGAACGCCATGAGAACATAATGCTTAGACAGGAGAATGATAAGCTCAGAGCTGAGAACAGTCTGATGAAGGAAGCAATGTCAAATCCAGTGTGTAACAGCTGTGGTGGGCCAGCGATTCCTGGTCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAGAATGCTCGACTAAAAGATGAGTTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAGCCAATCTCATCAATGACCGGTCCCATGGCTCTACCAACCTCAAATTCTGGTCTGGAACTTGGTATTGGAAGGAGTGGGCTTGGTGGTTCAAGCACTCTCGGCACTCCCTTACCAATGGGACTTGACTTGGGAGATGGAGTATTGGGCACTCAAACTGGAATGCCTGGGATTAGACCATCATTGGGGTTGATGGGAAACGAAGTTCAGCTAGAGAGATCTATGCTTATAGATCTTGCGTTGGCTGCTATGGAGGAATTGCTAAAGATGACTCAGGCAGAGAGCCCTCTTTGGATTAAGAGTTTGGATGGTGAGAAGGAAGTGTTTAATCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCCACTGGTTATGTAACCGAAGCTACAAGAGAAACTGGGATAGTAATCATCAACAGTTTAGCCCTTGTGGAAACTTTGATGGACGCGAATCGATGGGCAGAGATGTTTCCTTCTATGATTGCTAGAGCTATCAACCTCGATGTTATATCCAATGGCATGGGTGGAACAAGAAATGGTGCTCTACAAGTGATGCATGCTGAGGTACAATTGCTTTCACCACTAGTCCCCGTTCGCCAAGTGAGATTCATCCGGTTCTGTAAGCAACATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTATTGATGTTGGTCACGATGCTGCTAATGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGGTGTTCACCAACTTTATCGCCCATTGCTTAGTTCTGGTGTTGGATTTGGTGCTCATAGATGGATCGCCACTCTCCAGAGGCAGTGTGAATGCTTGGCTATCCTCATGTCGTCTTCCATTTCAAGTGATGATCACACAGCATTGAGCCAAGCTGGTCGGAGGAGCATGTTGAAATTGGCACAACGCATGACTAGTAACTTCTGTTCGGGGGTTTGTGCTTCGTCTGCTCGCAAGTGGGACATGCTTCACATTGGGACTCTCGGTGATGACATGAAGGTGATGACTAGGAAAAACGTGGATGACCCCGGTGAGCCTCCGGGGATCGTACTCAGTGCTGCAACTTCTGTTTGGATGCCAGTGTCACGGCAAAGGGTGTTTGATTTTCTGCGTGATGAACGGCTGAGAAGTGAGTGGGACATCTTGTCCAATGGTGGACCGATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAACTGTGTTTCTCTTCTCCGTGCCAACGCTGTTAATGCGAACGATAGCAGCATGCTGATTCTGCAAGAGACATGGATGGACGCGTCGTGCTCGGTGGTGGTATATGCGCCAGTTGACGTGCAATCACTGAACGTGGTAATGAGTGGGGGAGATTCTGCATACGTTGCACTCTTGCCTTCAGGCTTCGCCATTGTCCCCGATGGTCACTGCAACAACAGCACTTGCAATGGGACAATGCAGAAGGGTGGAGGAGGAGAAGACAGCGGCGGAAGCCTTCTGACGGTGGGGTTTCAAATTCTGGTGAACAGTCTGCCAACGGCAAAGCTGACAGTAGAGTCAGTGGACACAGTGAATAACCTGATTTCGTGCACCATTCAGAAGATCAAAGGTGCTCTGAGAGTTGCATAA 2256 0.4783 MEGPSEMGLIGENFDAGLMGRMRDDEYESRSGSDNFDGVSGDDQDGGDDQPQRKKRYHRHTPHQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRAENSLMKEAMSNPVCNSCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSMTGPMALPTSNSGLELGIGRSGLGGSSTLGTPLPMGLDLGDGVLGTQTGMPGIRPSLGLMGNEVQLERSMLIDLALAAMEELLKMTQAESPLWIKSLDGEKEVFNHEEYARLFSPCIGPKPTGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQVRFIRFCKQHAEGVWAVVDVSIDVGHDAANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESGVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDMLHIGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRVFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAIVPDGHCNNSTCNGTMQKGGGGEDSGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKGALRVA 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4694g00002 751 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Vium4694g00002 751 FunFam Homeobox-leucine zipper protein GLABRA 2 263 486 - -
Vium4694g00002 751 Pfam START domain 264 487 IPR002913 GO:0008289
Vium4694g00002 751 SUPERFAMILY Homeodomain-like 38 111 IPR009057 -
Vium4694g00002 751 Coils Coil 105 140 - -
Vium4694g00002 751 SMART START_1 263 487 IPR002913 GO:0008289
Vium4694g00002 751 MobiDBLite consensus disorder prediction 1 61 - -
Vium4694g00002 751 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Vium4694g00002 751 MobiDBLite consensus disorder prediction 18 32 - -
Vium4694g00002 751 CDD START_ArGLABRA2_like 258 486 - -
Vium4694g00002 751 SMART HOX_1 52 115 IPR001356 GO:0003677
Vium4694g00002 751 FunFam Homeobox-leucine zipper protein HDG1 40 127 - -
Vium4694g00002 751 SUPERFAMILY Bet v1-like 256 487 - -
Vium4694g00002 751 Gene3D - 41 127 - -
Vium4694g00002 751 ProSiteProfiles START domain profile. 254 490 IPR002913 GO:0008289
Vium4694g00002 751 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 50 748 IPR042160 -
Vium4694g00002 751 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Vium4694g00002 751 SUPERFAMILY Bet v1-like 515 745 - -
Vium4694g00002 751 CDD homeodomain 53 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4694g00002 Vium-Chr4694 17690 23838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4694g00002 6 748 Homeobox Transcription Factor Family AT3G61150 62.450 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4694g00002 START 4.8e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4694g00002 K09338 - gmx:100794400 1414.82