Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium468g00010 ATGAAGGAACCATCAAAGGCATGGAGACCCTTCACTGCAAATTGCTGCTCCACAGAGGACCAAACCGTGTTCAAGAACTTCAGCAGGTGCAAGCCTTCACGTTCTGACTTGTCAAAGAACATTGCTCCTTTGCCATCGTTCAGGAGGCTCTCCTTCTCTGATCTCAGTCGTTCCTCGTCTGTGCGAATCAATGAGGATCTTGCACAGTCTTTTGGGTCGGATTTGTTTGATTTTCAGCTGAGTGAGCTGCGTGCCATAACTCAGAATTTCAGCAGCAACTTCTTGCTGGGAGAAGGAGGGTTTGGAACTGTGCATAAGGGCTACGTAGATGATAATCTCAGGCTTGGTTTGAAGGCACAACCTGTTGCTGTCAAGCTTCTTGACATTGAAGGCTTGCAAGGACACCGTGAATGGCTGGCAGAAGTGATTTTTCTTGGGCAGCTAAGACACCCCAATTTGGTTAAGTTGATTGGGTATTGTTGTGAAGATGAAGAACGATTACTTGTCTATGAATTCATGCCACGAGGAAGTTTGGAGAATCACCTCTTCAGAAGGCTAACATCAATTCCATGGGGGACAAGATTAAAAATTGCAATAGGAGCTGCTAAAGGCCTTTCCTTCTTGCATGGAGCTGAGAAGCCAGTCATTTATAGAGACTTCAAGACTTCCAATGTTTTGCTTGATTCAGAGTTCACAGCAAAATTGTCAGATTTTGGACTTGCTAAAATGGGGCCAGAGGGATCCAACACTCATGTTTCAACCAGAGTAATGGGCACTTATGGATATGCAGCACCAGAATACATCTCAACAGGGCATTTAACAACCAAAAGTGATGTCTACAGCTTTGGGGTAGTCCTGCTAGAACTGCTGACAGGAAGAAGAGCAACGGACAAAACAAGACCAAAGACTGAGCAAAACCTTGTGGATTGGTCAAAACCTTACTTGAGTAGCAGTAGGAGGTTGAGGTACATTGTCGATCCAAGGCTTGCAGGCCAATATTCTGTGAAGGGTGCAAAGGAAATTGCCCGTTTGGCATTGCAATGCATAAGTTTGAATCCTAAAGACAGACCAAGAATGCCAATGATTGTTGAAACTCTTGAAGGCTTACAACAGTACAAGGACATGGCTGTTACCAGCGGACACTGGCCAGTGTCACAAAAATCTACTAGGAATAAAGTCTCCAACAATAAGACGAATGTCAACACTAGAGCCGGTGCAAACCACAAGCAACCATCACCAGTTCTGAGCAAAAAAACTTGA 1260 0.446 MKEPSKAWRPFTANCCSTEDQTVFKNFSRCKPSRSDLSKNIAPLPSFRRLSFSDLSRSSSVRINEDLAQSFGSDLFDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYVDDNLRLGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSIPWGTRLKIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSEFTAKLSDFGLAKMGPEGSNTHVSTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNLVDWSKPYLSSSRRLRYIVDPRLAGQYSVKGAKEIARLALQCISLNPKDRPRMPMIVETLEGLQQYKDMAVTSGHWPVSQKSTRNKVSNNKTNVNTRAGANHKQPSPVLSKKT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium468g00010 419 MobiDBLite consensus disorder prediction 383 419 - -
Vium468g00010 419 ProSiteProfiles Protein kinase domain profile. 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium468g00010 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vium468g00010 419 FunFam Serine/threonine-protein kinase BIK1 56 172 - -
Vium468g00010 419 Pfam Protein tyrosine and serine/threonine kinase 96 366 IPR001245 GO:0004672|GO:0006468
Vium468g00010 419 Gene3D Transferase(Phosphotransferase) domain 1 173 390 - -
Vium468g00010 419 FunFam Serine/threonine-protein kinase PBS1 173 381 - -
Vium468g00010 419 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
Vium468g00010 419 CDD STKc_IRAK 96 369 - -
Vium468g00010 419 PANTHER OS01G0588500 PROTEIN-RELATED 61 370 - -
Vium468g00010 419 Gene3D Phosphorylase Kinase; domain 1 53 172 - -
Vium468g00010 419 SUPERFAMILY Protein kinase-like (PK-like) 73 369 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium468g00010 Vium-Chr468 94267 97479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium468g00010 78 394 Glycoside Hydrolase AT3G07070 50.765 1.41e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium468g00010 PK_Tyr_Ser-Thr 9.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium468g00010 - - gmx:100814241 774.622