Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium468g00004 ATGGGCATTTGTCTTTTGAAATGGCAGTGGCCGTGGCTTCTTTTGATTGTGCTGATACATGTTGTAATCATTAAGAGCAATGCTATCACTCCCGATGGTGAGGTGCTTCTCAGCTTTAGGACATCAGTTGTTAATTCTGATGGTATCCTATTACAGTGGAGGCCAGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAATGTGATCCCAAAACCAAAAGAGTAACACATCTGAGTCTATCTCACCATAAGTTAAGTGGGTCTATATCACCTGACCTTGGGAAGCTCGAGAATCTGAGGGTTCTTGCTCTGCATAACAACAATTTCTATGGGACAATTCCTTCAGAATTGGGAAATTGCACTGCATTGGAGGGAATATTTTTACAGGGTAATTACCTTAGTGGAATCATTCCAAGTGAAATAGGAAACCTTTCGCTACTCGTAAATTTGGACATATCGAGCAATTCCCTCAGTGGGAATATTCCTGCATCACTTGGGAAGTTGTACAATCTCAAAAATTTCAATGTATCCACCAATTTTCTGGTCGGACCCATACCTTCTGATGGTGTCCTTGGCAACTTTACTGGAAGCTCCTTTGTTGGAAATCGTGGTCTGTGCGGAGTGAAAACCAATTCAACATGTAAAGATGATGGTTCACCGGGGACCAATACTCAATCTACTTCCTCAGACCAAAATCAAATGGGAAAGAAGAAATATTCTGGCCGACTACTCATCAGTGCATCAGCAACTGTGGGAGCTCTACTTTTGGTGGCACTTATGTGCTTCTGGGGCTGTTTCCTTTACAAGAAGTTTGGTAAAAATGACAGAATAAGCCTGGCAATGGATGTTGGCGCAGGTGCATCAATTGTGATGTTTCATGGAGACCTTCCATATTCTTCAAAAGACATCATTAAGAAACTAGAGACTTTGAATGAAGAACACATAATAGGAATTGGGGGATTTGGAACTGTATACAAGCTTGCAATGGATGATGGGAATGTCTTTGCTTTGAAAAGGATTGTAAAGTTGAATGAGGGGTTTGATCGTTTTTTTGAGAGGGAGCTTGAAATTCTTGGTAGCATCAAACATCGTTATCTAGTGAACTTACGAGGATATTGCAATTCACCAACATCGAAGTTGTTAATATATGACTACCTATCAGGTGGTAGTCTTGATGAAGCTCTTCATGAAAGGGCTGAGCAACTAGACTGGGATTCACGCTTAAATATAATCATGGGTGCTGCAAAAGGGCTTGCTTACTTGCACCATGATTGCTCCCCTAGGATTATACACCGAGACATAAAATCTAGTAACATTTTACTTGATGGAAACTTGGATGCTCGAGTATCTGATTTTGGACTTGCCAAACTTCTGGAGGATGAAGAATCGCACATCACCACTATTGTTGCTGGAACATTTGGTTATCTTGCTCCAGAGTATATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGTTTTGGTGTGTTGACACTCGAAGTGCTGAGTGGAAAGCGGCCAACAGATGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGTTGAATTTTCTAATTACAGAAAATAGGCCGAGGGAAATTGTTGACCCACTATGTGATGGGGTGCAAGTGGAGAGCCTAGATGCCTTGCTCTCTGTGGCTATTCAGTGTGTCTCCTCAAGTCCAGAAGATCGACCCACTATGCATCGAGTAGTGCAATTGTTTGAATCAGAGGTCGTAACTCCATGCCCTAGTGACTTCTATGATTCCAACTCCGATTAG 1788 0.4189 MGICLLKWQWPWLLLIVLIHVVIIKSNAITPDGEVLLSFRTSVVNSDGILLQWRPEDPDPCKWKGVKCDPKTKRVTHLSLSHHKLSGSISPDLGKLENLRVLALHNNNFYGTIPSELGNCTALEGIFLQGNYLSGIIPSEIGNLSLLVNLDISSNSLSGNIPASLGKLYNLKNFNVSTNFLVGPIPSDGVLGNFTGSSFVGNRGLCGVKTNSTCKDDGSPGTNTQSTSSDQNQMGKKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDRISLAMDVGAGASIVMFHGDLPYSSKDIIKKLETLNEEHIIGIGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERAEQLDWDSRLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKSDVYSFGVLTLEVLSGKRPTDAAFIEKGLNIVGWLNFLITENRPREIVDPLCDGVQVESLDALLSVAIQCVSSSPEDRPTMHRVVQLFESEVVTPCPSDFYDSNSD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium468g00004 595 ProSitePatterns Protein kinases ATP-binding region signature. 316 342 IPR017441 GO:0005524
Vium468g00004 595 SUPERFAMILY Protein kinase-like (PK-like) 295 577 IPR011009 -
Vium468g00004 595 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 284 385 - -
Vium468g00004 595 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 73 578 - -
Vium468g00004 595 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 386 588 - -
Vium468g00004 595 Gene3D Ribonuclease Inhibitor 30 215 IPR032675 -
Vium468g00004 595 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 191 - -
Vium468g00004 595 Gene3D Transferase(Phosphotransferase) domain 1 386 583 - -
Vium468g00004 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Vium468g00004 595 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vium468g00004 595 ProSiteProfiles Protein kinase domain profile. 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium468g00004 595 Gene3D Phosphorylase Kinase; domain 1 283 385 - -
Vium468g00004 595 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium468g00004 595 SMART serkin_6 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium468g00004 595 MobiDBLite consensus disorder prediction 214 234 - -
Vium468g00004 595 SUPERFAMILY L domain-like 30 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium468g00004 Vium-Chr468 50729 59587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium468g00004 1 586 Receptor kinase-like Gene Family AT2G35620 75.256 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vium468g00004 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium468g00004 - - gmx:100819230 1124