Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium468g00002 ATGTTCGGTGGCGGAGGGGAGGACGCGTTTGCGGCGCGGCTTGGCATGGTGACGCCGTCGCTGATGAACCCCGCGACGTCGTTGGTGATGTCCGGGGAGGTGTCAGCGGCGGTGAGGGAGGAGAGGGGACCCGCGCAGCCGCAGTGGAGCCAGCAGGAGACGCGGGAGTTCATATCGATACGCGCGGAGCTGGAAAGGGACTTCACTGCGTCCAAGCGGAACAAGACGCTTTGGGAAGTGGTGAGTTCGAAGATGAGGGAGAGAGGGTTCAGGAGGAGCCCTGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAGACATCTGACCCAGAGCATAGCAGGCAATGTCCATTTTTTGAAGAATTGCATGCAGTATTTACCCAAAGGGCACATAATATGCAACGATTGCTTCTTGAATCTGAAACTCGCTCAGCTCAAACCAAGAAAGGAGTGAAAAGATCAAGTGGAGATCGATCTTCAGAGGAACTCTCAGAAGATGACGACGAGGTTGAATATGACAGCGAAGAGGAAAAACCTTCTAGAAGCAATACCCGCAAAAGAAAAGTTGACAAAGTTGGAACGGATAAGTCTTCTTCAAGGGCAAACAATCCATCGAATGCTGTCAATAGTAGTACTAGTAGTATTCAGGAAATGCTAAAGGAATTTTTCCAGCACCAGTTAAGGATGGAGATGCAGTGGAGGGAGATGATGGAGAGACGTGCTCATGAAAGACAGTTGTTTGAACAGGAGTGGAGGCAGTCGATGGAGAAGCTTGAGCGTGAGAGGTTAATTATTGAACAGGCATGGAGGGAGAGAGAAGAACAGAGGAGAATGAGAGAAGAGAGTAGGGCGGAAAAAAGGGACGCCTTATTGACGACCCTTTTGAACAAACTCATTAATGAATCTAACTAA 930 0.4925 MFGGGGEDAFAARLGMVTPSLMNPATSLVMSGEVSAAVREERGPAQPQWSQQETREFISIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHSRQCPFFEELHAVFTQRAHNMQRLLLESETRSAQTKKGVKRSSGDRSSEELSEDDDEVEYDSEEEKPSRSNTRKRKVDKVGTDKSSSRANNPSNAVNSSTSSIQEMLKEFFQHQLRMEMQWREMMERRAHERQLFEQEWRQSMEKLERERLIIEQAWREREEQRRMREESRAEKRDALLTTLLNKLINESN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium468g00002 309 Coils Coil 254 274 - -
Vium468g00002 309 Gene3D - 49 110 - -
Vium468g00002 309 ProSiteProfiles Myb-like domain profile. 49 105 IPR001005 -
Vium468g00002 309 PANTHER FI21293P1 40 305 - -
Vium468g00002 309 SMART sant 45 107 IPR001005 -
Vium468g00002 309 Pfam Myb/SANT-like DNA-binding domain 47 130 IPR044822 -
Vium468g00002 309 MobiDBLite consensus disorder prediction 144 219 - -
Vium468g00002 309 MobiDBLite consensus disorder prediction 181 201 - -
Vium468g00002 309 MobiDBLite consensus disorder prediction 202 219 - -
Vium468g00002 309 CDD GT1 47 112 - -
Vium468g00002 309 FunFam Zinc finger and SCAN domain-containing 20 49 110 - -
Vium468g00002 309 MobiDBLite consensus disorder prediction 151 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium468g00002 Vium-Chr468 15311 17442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium468g00002 43 304 Trihelix Transcription Factor Family AT2G38250 45.489 1.79e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium468g00002 Myb_DNA-bind_4 4.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium468g00002 - - gmx:100812635 502.671