Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4687g00003 ATGCATCACCTATCTCGGATTTTTGAGCACCGCAACCGCACCAAAGCCATGGATCAGAAAAACCCGCGGAGGAAGCCCAAGCTCGAGCGCCGCAACGCTCTCAAGTACTCTGAATACGACTCCGGATCATCTACCTCCGACGAAGCGCTCTACACACGCTCCATGGAGTTCTACGACCGCACCAGCTTCCGAATCGAGGGCGTCGAGGGAGAGTTCGATCGAATTTGCAGGAGTTTAGGTCTTTCCGGCCCAGAAGACTTCTCTATTCCCGCTGCGGCCTGGGAAGCCATGAAATTTCGTTCCTCTTCCGATATCCTCCCGAGACTGAAGCTCGAAAACCTCGATATTCCCGAGGAAGAGGAAGAGGACGAAGAAGAAGAAGTACCGAACATAAACGAGGAGAGAATACTGAAACCACCAGAGGATGGTGAATTTAGTGAAAAATTAGGAGATGGGGTTAGGGTTTTGGAGGCAGATGAGTCGACCACTGGTATTAAGGGTGTTCGTCCGCCGATGCTGAAGCCGCCGCCGGGGGTTAGAGTTCAGTTGGTGGATGATAGCTCGTGTTCCACGTGGGACCTTTTGAGGGATTTGGCTCCGATAGGGGAAGAGTTATCGTTGAAGCACTCCGAGCATACGAGGGATGTAGAGAATGATGCACCGTTAGGGGTAGTAGAGCGGGAGGTATCGAAGAAAGAAGAAGGGGAAGTGGGTAGAGCGAGCCCGAAGAGGGAAGAGGAAGAGAATGTGGATAATGCAGCGAGGATTGCGGAGATCGTGGCTGGGCTTTCTGAATCATGTTCGTTTTCCACGTCGAACGAAGATGATTCTTCTAGTAGTACAACGGATCATACCCCCAACAATATTTCTCCGCAAGGGAGAATCAAGCGGATTATTACCGCCGGAAGTTGGCAGAAGGGTGAGTTTCTTGGGGGTGGCTCGTTTGGCACCGTTTATGAAGGAATTTCTGATGATGGATTCTTTTTTGCTGTAAAAGAAGTTTCATTGCTTGATCAGGGGACTCAGGGAAAGCAAAGTGTATATCAACTGGAGCAGGAAATAGCACTTTTGAGTCAGTTTGAGCATGAAAATATTGTTCAATATTATGGCACAGAAATGGATGAATCAAAGCTGTATATCTTTCTTGAGTTTGTAACCAAAGGTTCCCTTAGAAGCCTCTACCAAAAGTATACTCTTCGAGATTCCCAAGTATCTGCCTATACAAGACAGATTCTTCATGGTATGAAGTATCTTCATGATCGAAATGTGGTTCACAGGGATATCAAATGTGCAAATATATTGGTGGATGCAAGTGGATCTGTCAAGCTTGCAGATTTTGGATTGGCCAAGGCAACCAAAATGAATGACGTTAAATCAATGAAGGGTACAGCATTCTGGATGGCCCCGGAGGTTGTGAAAGGAAAGAACAAGGGATATGGGCTTCCAGCTGATATATGGAGTGTGGGATGCACTGTACTGGAGATGTTAACAGGCCAACTTCCGTACTGTGATTTGGAATGGATGCAGGCATTATTTAGAATTGGAAAAGGTATTCGACCATCTATTCCCGACTCCCTTTCGAGAGATGCAACCGATTTTATCCTGCAGTGCCTTCAAGTTAATCCAAATGAGCGTCCCACCGCTGCTCAACTTCTAAACCATTCATTTGTCCAAAGGCCACTTTCCCAGACCTCTGGTTCTTCATTTCCTCATGTTCTTGGCCGGAAGGGTTAA 1734 0.4723 MHHLSRIFEHRNRTKAMDQKNPRRKPKLERRNALKYSEYDSGSSTSDEALYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFSIPAAAWEAMKFRSSSDILPRLKLENLDIPEEEEEDEEEEVPNINEERILKPPEDGEFSEKLGDGVRVLEADESTTGIKGVRPPMLKPPPGVRVQLVDDSSCSTWDLLRDLAPIGEELSLKHSEHTRDVENDAPLGVVEREVSKKEEGEVGRASPKREEEENVDNAARIAEIVAGLSESCSFSTSNEDDSSSSTTDHTPNNISPQGRIKRIITAGSWQKGEFLGGGSFGTVYEGISDDGFFFAVKEVSLLDQGTQGKQSVYQLEQEIALLSQFEHENIVQYYGTEMDESKLYIFLEFVTKGSLRSLYQKYTLRDSQVSAYTRQILHGMKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKMNDVKSMKGTAFWMAPEVVKGKNKGYGLPADIWSVGCTVLEMLTGQLPYCDLEWMQALFRIGKGIRPSIPDSLSRDATDFILQCLQVNPNERPTAAQLLNHSFVQRPLSQTSGSSFPHVLGRKG 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4687g00003 577 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vium4687g00003 577 ProSiteProfiles Protein kinase domain profile. 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4687g00003 577 MobiDBLite consensus disorder prediction 227 250 - -
Vium4687g00003 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Vium4687g00003 577 Gene3D Transferase(Phosphotransferase) domain 1 302 571 - -
Vium4687g00003 577 Pfam Protein kinase domain 305 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4687g00003 577 FunFam Mitogen-activated protein kinase 1, putative, expressed 302 569 - -
Vium4687g00003 577 MobiDBLite consensus disorder prediction 131 147 - -
Vium4687g00003 577 SUPERFAMILY Protein kinase-like (PK-like) 283 562 IPR011009 -
Vium4687g00003 577 SMART serkin_6 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4687g00003 577 MobiDBLite consensus disorder prediction 267 292 - -
Vium4687g00003 577 MobiDBLite consensus disorder prediction 10 36 - -
Vium4687g00003 577 MobiDBLite consensus disorder prediction 116 147 - -
Vium4687g00003 577 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 138 565 - -
Vium4687g00003 577 MobiDBLite consensus disorder prediction 9 46 - -
Vium4687g00003 577 MobiDBLite consensus disorder prediction 116 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4687g00003 Vium-Chr4687 29698 36954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4687g00003 4 561 MAP Kinase Kinase Kinase AT4G08500 48.548 1.93e-168 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium4687g00003 Pkinase 8.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4687g00003 K13414 - gmx:100819999 919.842