Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4680g00012 ATGCCTCAAAAGCATAACACCTTGGTCTACCTCCATGGGACCCTCGATCTGGTAATCGTCGAGGCTCGCTGCCTTCCCAACATGGATTTGCTCTCCGAGCGTGTCCGAAGGTTCTTCTCCGCCCTCAACACTTGCAGCGCCTCCATATCCGGAAAAAGGAAGCTCCACCGCGCCCGCCACCGCCACCGCAAGATCATCACCAGCGATCCTTACGTCACCGTGTGCCTCGCCGGCGCCACCGTCGCGCGCACCCGCGTGATCTCTAATTCGCAGAGCCCTTCCTGGGACGAGCACTTCAAGATCCCGCTCGCGCACCCGGCCGCGCAGGTCGACTTCTTCGTCAAGGACAACGACATGTTCGGCGCCGACCTCATCGGAGTCGTCACCGTCTCAGCCGAGAGAATCCTCTCCGGCGAACCCATCAGCGACTGGTTCCCGATCATCGGCTCGTTCGGGAAGCAGCCGAAGCCTGACTGCGCGCTGCGCCTAGCGATGAAATTCACGAGGTGCGAGAACACTCGCATGTTCCGGTCCCTCAAGGAACCGGATCCGGATCGGTTCGTGGTTCGGGACTCTTATTTCCCGGTCCGTCACGGAGGGGCGGTGACGCTGTATCAGGACGCGCACGTGCCAGAGGCAATGTTGCCGGAGGTTGAGTTAGAGGAGGGTGTGAATTTTGAGCATGGGAAGTGCTGGGAAGATATATGCCACGCTATTTTGGAAGCGCACCATTTGGTTTACGTTGTGGGTTGGTCCATCTACCACAAAGTTAGGCTCGTGAGAGAGCCTACCAAACCCTTACCGAGCGGTGGTAGTTTGAATTTGGGGGAGTTGCTCAAGTACAAGTCCCAAGAAGGTTTGCGAGTTTTACTTTTGGTTTGGGATGATAAGACTTCGCACAGCAAGTTTTTCATTAACACGACTGGAGTAATGCAAACGCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTAGATGTTTGCTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAGGCAGCAGGTTGTTGGAACTCTCTTTACACATCATCAGAAATGTGTGATTGTGGATACTCAAGCACATGGCAATAATAGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCTGAGCACAGACTTTTCCGCGATAAGGACACTGTTTATCAGGACGATTATCATAATCCCAGTTTTTGCACGGGAACCAAAGGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATATACTTACTAATTTTGAGCAGCGTTGGAGAAAGGCCACGAGATGGTCTGAGTTGGGTCGAAAGCTCAAAAGAGTGTCTCACTGGAACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAATTCCAACTGATGATCCTGAACTCTGGGTTTCGAAGGAAGGCGATCCTAAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGCTCTTTGAAAGGATTTCCTAAGGATGTATTTGAAGCTGAGTCCCAGAACCTTGTGTGTGCAAAAAATCTGGTTATAGACAAGAGTATTCAAACAGCGTATATACACGCTATCAGATCTGCTCAACATTTTATTTATATCGAGAATCAATATTTTGTTGGATCATCCTTTGCTTGGCCAGCTTACAAAGATGCAGGCGCTGATAACCTAATTCCGATGGAGTTGGCACTGAAGATAGTTAGTAAGATACGATCCAAGGAGAGATTTACAGTGTATATAGTCATCCCAATGTGGCCTGAAGGTAACCCTTCTTCTGCTTCTGTGCAAGAGATACTCTTTTGGCAGGCACAAACTATGCAAATGATGTATAATGTCATAGCTCGGGAATTAAAAGTTATGGAACTTGACCATCATCCACAAGATTATCTCAACTTTTATTGTCTTGGAAACCGAGAGCCGTTGAAAAATGGTTTTTTAAGTCCAAGTAGTTCGTCTCCAGATAATGGCGAAACGATTTCAGCCTCACAAAAGTTCCGAAGGTTCATGATTTATGTACATGCCAAGGGAATGATTGTGGATGACGAATATGTAATTCTTGGGTCTGCCAATATCAATCAACGATCTATGGCTGGATCAAGAGACACCGAGATAGCCATGGGTGCGTATCAACCCCATCATACATGGGGTAAGAAAAAGGGGCATCCACATGGTCAGGTATATGGGTATAGGATGTCTTTATGGGCAGAACACATAGGGAGCATACAAGCTTGCTTTAAGAATCCTGAAAGTCTGGAATGCGTGAGAAGTGTGAACAGTATTGCTGAAGAAAACTGGAGGAGGTACACATCTGACGATTATAATCCATTGCAAGGGCACCTGATCAAATATCCTGTGAGTATAAATGCCACTGGGAAGATAAAGTCCCTACCTGGATTTGAGTCTTTCCCAGATGTTGGAGGCAAGGTGCTTGGCTCCAGATCCAACCTTCCTGATGCTCTAACCACATAG 2544 0.4725 MPQKHNTLVYLHGTLDLVIVEARCLPNMDLLSERVRRFFSALNTCSASISGKRKLHRARHRHRKIITSDPYVTVCLAGATVARTRVISNSQSPSWDEHFKIPLAHPAAQVDFFVKDNDMFGADLIGVVTVSAERILSGEPISDWFPIIGSFGKQPKPDCALRLAMKFTRCENTRMFRSLKEPDPDRFVVRDSYFPVRHGGAVTLYQDAHVPEAMLPEVELEEGVNFEHGKCWEDICHAILEAHHLVYVVGWSIYHKVRLVREPTKPLPSGGSLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVRCLLSPRYASSKLSIFRQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRLFRDKDTVYQDDYHNPSFCTGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATRWSELGRKLKRVSHWNDDSLIKLERISWILSPSESIPTDDPELWVSKEGDPKNWHVQVFRSIDSGSLKGFPKDVFEAESQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFVGSSFAWPAYKDAGADNLIPMELALKIVSKIRSKERFTVYIVIPMWPEGNPSSASVQEILFWQAQTMQMMYNVIARELKVMELDHHPQDYLNFYCLGNREPLKNGFLSPSSSSPDNGETISASQKFRRFMIYVHAKGMIVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPHHTWGKKKGHPHGQVYGYRMSLWAEHIGSIQACFKNPESLECVRSVNSIAEENWRRYTSDDYNPLQGHLIKYPVSINATGKIKSLPGFESFPDVGGKVLGSRSNLPDALTT 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4680g00012 847 Gene3D Endonuclease Chain A 519 739 - -
Vium4680g00012 847 SUPERFAMILY Phospholipase D/nuclease 539 778 - -
Vium4680g00012 847 Gene3D Endonuclease Chain A 223 469 - -
Vium4680g00012 847 SUPERFAMILY Phospholipase D/nuclease 180 456 - -
Vium4680g00012 847 SMART pld_4 693 720 IPR001736 GO:0003824
Vium4680g00012 847 SMART pld_4 350 385 IPR001736 GO:0003824
Vium4680g00012 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824
Vium4680g00012 847 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Vium4680g00012 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824
Vium4680g00012 847 Pfam C2 domain 13 147 IPR000008 -
Vium4680g00012 847 CDD C2_plant_PLD 9 168 - -
Vium4680g00012 847 Gene3D C2 domain 11 178 IPR035892 -
Vium4680g00012 847 PANTHER PHOSPHOLIPASE D 5 837 IPR015679 -
Vium4680g00012 847 FunFam Phospholipase D delta 222 466 - -
Vium4680g00012 847 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 152 IPR035892 -
Vium4680g00012 847 PIRSF PLD_plant 1 847 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vium4680g00012 847 SMART C2_3c 14 144 IPR000008 -
Vium4680g00012 847 FunFam Phospholipase D 509 739 - -
Vium4680g00012 847 Pfam Phospholipase D Active site motif 351 385 IPR001736 GO:0003824
Vium4680g00012 847 Pfam Phospholipase D Active site motif 694 720 IPR001736 GO:0003824
Vium4680g00012 847 Pfam Phospholipase D C terminal 768 837 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4680g00012 Vium-Chr4680 136695 150765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4680g00012 8 676 Phospholipase D Gene Family (Wang group) AT4G35790 65.255 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4680g00012 K01115 - gmx:100795859 1568.9