Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4680g00004 ATGATTGATTCGGTTCTTCTCGCGCTTTTCTTGCCCTGCCTCGGTATGAGTGCGGTTTTCATCGTTTACATGTGCCTTCTGTGGTACGCCACCACCCGCCACCACCCCCCTGGTAACGCCTTACCGGTGAAGCAGGTCGCTGACAAGGGTCTCTCTTCCCTAGAGCTAGAGAAGCTTCCTAAAATTACCGGCAAAGAACTGGTCTTGGGCACTGAATGCGCCGTCTGCCTCGACGAGATCGAAGGCGAGCAACCGGCTAGACTGGTTCCTGGTTGCAACCATGGCTTCCATGTCCATTGCGCTGATACATGGCTCTCCAATCACCCACTTTGTCCTGTATGTAGGACGAAACTCGATCCTCAAATTTTCAGTTCTAATATTCCCTGA 387 0.522 MIDSVLLALFLPCLGMSAVFIVYMCLLWYATTRHHPPGNALPVKQVADKGLSSLELEKLPKITGKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVHCADTWLSNHPLCPVCRTKLDPQIFSSNIP 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4680g00004 128 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Vium4680g00004 128 SUPERFAMILY RING/U-box 72 121 - -
Vium4680g00004 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 121 IPR013083 -
Vium4680g00004 128 Pfam Ring finger domain 72 115 IPR001841 -
Vium4680g00004 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 121 - -
Vium4680g00004 128 SMART ring_2 73 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4680g00004 Vium-Chr4680 28817 29591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4680g00004 1 126 C3H Transcription Factor Family AT5G42200 58.462 1.67e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4680g00004 K19037 - gmx:100776003 239.58