Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4679g00003 ATGGCCGTGGAGCTCATGACAGGCTACAGAACCACCACTTTCACCACCAAAGCAGAGGAAAATGCCGTCCAGGAAGCAGCCTCCGGTTTGGAGAGCGTGGAGAAGCTCATCAGAATCCTCTCTCAGACTCCCCAACAATACAACTCCTCCAATCAAATAGCTATCGACTGCAAGGCCGTCGCCGACCTCGCAGTTTCCAAGTTCAAAAACGTCATTTCGCTCCTCGGCCCAGGCCCAGGCCCAACCCCAACCCCAGCCCCAACCGGCCACGCCCGCTTCCGAAGAGCTCCTCTTCCTCCTCCTCCGTCTCCTCCTTCCACACAACCCTCCCAGCCTCCCGTCTTCCACGCCACCCCTCTGCACCAAATCCCCAAAACAGACGGCACCCTCAACGACTCCTCTTCAAAAACCATTTATTTCTCCTACCCCTCCCCCGCCACTTCCTTCATCTCCTCCCTCACCGCCGACGCCCACACAAAACAACCCTCTTCCTCCTCGCCGCCCCCGCCTGCGCCGGGTTCTTTCCACATCACCACTCTCTCCCACGTCTCATCCGCTGGGAAGCCTCCCCTCTCCTCCTCCTCCTCTTTCAAGAGGAAGTGCAGCTCTGAGAACCTGCCTTCTGGAAAGTGCGGTAGCTCCTCCAGCCGCTGTCATTGCTCCAAAAAGAGTAGGAAAATGAGGTTGAAGAAGGTGGTGAGGGTACCGGCTATAAGCTTGAAGATGGCCGATATTCCACCGGATGATTATTCTTGGAGGAAGTATGGACAGAAACCGATCAAAGGATCCCCTCATCCAAGGGGTTACTAA 810 0.563 MAVELMTGYRTTTFTTKAEENAVQEAASGLESVEKLIRILSQTPQQYNSSNQIAIDCKAVADLAVSKFKNVISLLGPGPGPTPTPAPTGHARFRRAPLPPPPSPPSTQPSQPPVFHATPLHQIPKTDGTLNDSSSKTIYFSYPSPATSFISSLTADAHTKQPSSSSPPPPAPGSFHITTLSHVSSAGKPPLSSSSSFKRKCSSENLPSGKCGSSSSRCHCSKKSRKMRLKKVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4679g00003 269 MobiDBLite consensus disorder prediction 94 112 - -
Vium4679g00003 269 Gene3D WRKY domain 225 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4679g00003 269 ProSiteProfiles WRKY domain profile. 241 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4679g00003 269 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 269 IPR044810 GO:0003700
Vium4679g00003 269 MobiDBLite consensus disorder prediction 177 218 - -
Vium4679g00003 269 MobiDBLite consensus disorder prediction 246 269 - -
Vium4679g00003 269 Pfam WRKY DNA -binding domain 248 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4679g00003 269 MobiDBLite consensus disorder prediction 74 131 - -
Vium4679g00003 269 SUPERFAMILY WRKY DNA-binding domain 243 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4679g00003 269 MobiDBLite consensus disorder prediction 155 219 - -
Vium4679g00003 269 Pfam Plant zinc cluster domain 198 244 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4679g00003 Vium-Chr4679 17498 18974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4679g00003 1 267 WRKY Transcription Factor Family AT2G23320 44.912 4.07e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4679g00003 Plant_zn_clust 5.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4679g00003 - - vum:124838807 471.47