Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4679g00002 ATGGCCGTGGAGCTCATGACAGGCTACAGAACCACCACTTTCACCACCAAAGCAGAGGAAAATGCCGTCCAGGAAGCAGCCTCCGGTTTGGAGAGCGTGGAGAAGCTCATCAGAATCCTCTCTCAGACTCCCCAACAATACAACTCCTCCAATCAAATAGCTATCGACTGCAAGGCCGTCGCCGACCTCGCAGTTTCCAAGTTCAAAAACGTCATTTCGCTCCTCGGCCCAGGCCCAGGCCCAACCCCAACCCCAGCCCCAACCGGCCACGCCCGCTTCCGAAGAGCTCCTCTTCCTCCTCCTCCGTCTCCTCCTTCCACACAACCCTCCCAGCCTCCCGTCTTCCACGCCACCCCTCTGCACCAAATCCCCAAAACAGACGGCACCCTCAACGACTCCTCTTCAAAAACCATTTATTTCTCCTACCCCTCCCCCGCCACTTCCTTCATCTCCTCCCTCACCGCCGACGCCCACACAAAACAACCCTCTTCCTCCTCGCCGCCCCCGCCTGCGCCGGGTTCTTTCCACATCACCACTCTCTCCCACGTCTCATCCGCTGGGAAGCCTCCCCTCTCCTCCTCCTCCTCTTTCAAGAGGAAGTGCAGCTCTGAGAACCTGCCTTCTGGAAAGTGCGGTAGCTCCTCCAGCCGCTGTCATTGCTCCAAAAAGAGGAAAATGAGGTTGAAGAAGGTGGTGAGGGTACCGGCTATAAGCTTGAAGATGGCCGATATTCCACCGGATGATTATTCTTGGAGGAAGTATGGACAGAAACCGATCAAAGGATCCCCTCATCCAAGGGGTTACTAA 807 0.5638 MAVELMTGYRTTTFTTKAEENAVQEAASGLESVEKLIRILSQTPQQYNSSNQIAIDCKAVADLAVSKFKNVISLLGPGPGPTPTPAPTGHARFRRAPLPPPPSPPSTQPSQPPVFHATPLHQIPKTDGTLNDSSSKTIYFSYPSPATSFISSLTADAHTKQPSSSSPPPPAPGSFHITTLSHVSSAGKPPLSSSSSFKRKCSSENLPSGKCGSSSSRCHCSKKRKMRLKKVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGY 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4679g00002 268 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 268 IPR044810 GO:0003700
Vium4679g00002 268 MobiDBLite consensus disorder prediction 245 268 - -
Vium4679g00002 268 Pfam WRKY DNA -binding domain 247 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4679g00002 268 ProSiteProfiles WRKY domain profile. 240 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4679g00002 268 MobiDBLite consensus disorder prediction 94 112 - -
Vium4679g00002 268 MobiDBLite consensus disorder prediction 177 216 - -
Vium4679g00002 268 Gene3D WRKY domain 223 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4679g00002 268 Pfam Plant zinc cluster domain 198 243 IPR018872 -
Vium4679g00002 268 MobiDBLite consensus disorder prediction 74 131 - -
Vium4679g00002 268 MobiDBLite consensus disorder prediction 155 218 - -
Vium4679g00002 268 SUPERFAMILY WRKY DNA-binding domain 242 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4679g00002 Vium-Chr4679 17489 18967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4679g00002 1 266 WRKY Transcription Factor Family AT2G23320 45.070 6.19e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4679g00002 Plant_zn_clust 5.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4679g00002 - - vum:124838807 461.07