Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4676g00009 ATGTTTTCGTGGCTGGCAAGGATAGTGTCGGCATGCTTGAGACCGGTGAGGCGATATGCGCGTATGAGCAAGGATGACTTCGACGACGCCGCCGCCGCCAGCGACGTGCTCGTGTGGCACCGCGATCTCGAGAAGCACTCCTGCGGCGAGTTCTCCTTCGCCGTCGTGCAGGCTAACGAAGTGATCGAGGATCAAAGCCAGGTGGAGACCGGCGCCGACGCCGTCTTCGTCGGCGTCTATGACGGACACGGCGGAGCCGAAGCCTCGCGCTTCATCAACGATCACCTATTCCTTAATCTCATGAGGGTTGCTCAAGAAAATGGTTCTATCACCGAAGATATTATCAGGAATGCTGTTTCTGCTACTGAGGATGGGTTTCTGACTCTTGTTCGAAGGAGTTATGGAATAAAGCCATTGATAGCAGCAATGGGTTCCTGTTGCCTGGTTGGTGTTGTCTGGAAAGGAACACTATATATTGCGAATCTCGGAGACTCTCGAGCTGTGATTGGTTCTGTAGGTAGATCAAACAAGATCATCGCTGAACAGTTGACCAAAGAGCACAATGCAAGCAAGGAGGAGGTTAGACGAGAACTCAGGTCTTTGCATCCAGAAGATTCACAAATTGTAGTTATGAAGCAAGGAACGTGGCGCATTAAAGGCATCATCCAGGTATCCAGATCTATAGGAGATGCATATTTGAAGCGGCCGGAGTTCTCGTTCGATCCGTCATTCCCACGGTTCCATCTGCCTGAACCTATCCGCCGCCCTGTGCTAACTGCAGAACCATCCATATGTTCAAGAGTTTTACGACCTAATGATAAGTTCGTTATCTTTGCATCTGATGGACTCTGGGAGCACTTGACAAACCAGGAAGCTGCTGAGATCGTTCATAACAATCCACGAACAGGGATTGCAAGAAGACTTCTTATGGCAGCTTTGAATGAAGCAGCTAGGAAAAGGGAAATGAGATATAAAGACCTCCAGAAGATTGGAAAGGGGATTAGACGTTTCTTCCATGATGATATCACAGTGGTGGTTGTCTTCATTGACCATGAAATGGGTGGCAAGAAGGTTACAGTTCCTGAGTTGTCCATCAAAGGGTTTATTGACACAGTTGGACCATCAAATTTTAGAAATTTGCGGGGTTTGGAATGA 1155 0.484 MFSWLARIVSACLRPVRRYARMSKDDFDDAAAASDVLVWHRDLEKHSCGEFSFAVVQANEVIEDQSQVETGADAVFVGVYDGHGGAEASRFINDHLFLNLMRVAQENGSITEDIIRNAVSATEDGFLTLVRRSYGIKPLIAAMGSCCLVGVVWKGTLYIANLGDSRAVIGSVGRSNKIIAEQLTKEHNASKEEVRRELRSLHPEDSQIVVMKQGTWRIKGIIQVSRSIGDAYLKRPEFSFDPSFPRFHLPEPIRRPVLTAEPSICSRVLRPNDKFVIFASDGLWEHLTNQEAAEIVHNNPRTGIARRLLMAALNEAARKREMRYKDLQKIGKGIRRFFHDDITVVVVFIDHEMGGKKVTVPELSIKGFIDTVGPSNFRNLRGLE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4676g00009 384 Gene3D - 28 357 IPR036457 -
Vium4676g00009 384 SMART PP2C_4 44 347 IPR001932 -
Vium4676g00009 384 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Vium4676g00009 384 PANTHER PROTEIN PHOSPHATASE 40 347 IPR015655 GO:0004722|GO:0006470
Vium4676g00009 384 FunFam Probable protein phosphatase 2C 42 41 357 - -
Vium4676g00009 384 Coils Coil 180 200 - -
Vium4676g00009 384 ProSiteProfiles PPM-type phosphatase domain profile. 50 349 IPR001932 -
Vium4676g00009 384 Pfam Protein phosphatase 2C 69 316 IPR001932 -
Vium4676g00009 384 SUPERFAMILY PP2C-like 56 350 IPR036457 -
Vium4676g00009 384 CDD PP2Cc 51 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4676g00009 Vium-Chr4676 37922 41967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4676g00009 1 377 PP2C-type Phosphatase Gene Family AT5G06750 69.588 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4676g00009 K01102 - gmx:100778238 712.605