Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4676g00001 ATGGAGGGGCCAGAAGATGCATATCCAAGGATAGAGGATCAGATTAAATATTCCTCTATGGCTCCAAAGAAGTTTAGGCTAAGGGAACTAACGAAAGCAACTGGTGGATTCAGCCTTCAAAACAAGCTTGGACAAGGCGGGTTTGGAACTGTATATAAGGGGCTACTGGAAAATAAAGAGGTAGCTGTAAAGAGAGTTTCCAAAAACTCACGCCAAGGGAAGCAAGAGTTTTTAGCAGAAGTGACAACAATCGGAAGCCTTCACCATAGAAATTTGGTGAAACTCACTGGTTGGTGCTATGAGAATAGAGAGCTTCTCCTTGTTTACGAGTTCATGCCTAATGGAAGCCTAGACAAGTACCTCTTTGGTGACAAAGATTGTGGTTATAATTATGACTTTGAAGGAGGGTATTCTATAACATTGGACTGGGAAACTAGGCGAAGAGTGATTTATGGGGTGGCTCAAGCACTTGACTACCTTCACGATGGGTGTGAGAGAAGAGTTCTCCACAGAGACATCAAGGGCAGCAACATAATGCTGGACTCAGATTACAATGCCAAGCTTGGAGACTTTGGATTGGCTAGAACAATTCAGCAGAGAAATGAAACGCATCACTCTACAAAAGAGATTGCTGGCACACCCGGGTACATGGCCCCAGAAACCTTCCTGACTGGGAGGGCAACGGTGGAGACAGATGTGTATGCATTTGGGGTTCTTGTGTTGGAAGTAGTGTGTGGAAAGAGGCCAGGGAATGTGTATTCACAGGATGACTACAAGAACAGCATTGTGTATTGGGTGTGGGATTTGTATGGGAAGGGAAAAGTAGTTGGTGCTGTTGATGTAAGGTTGAAGAAGGAGGAGATTAAGGAGGAAGAGGTGGACTGCGTTCTTGTTCTTGGCTTGGCTTGTTGCCATCCAAATCCACACAAAAGACCATCAATGAGAACAGTTCTTCAGGTTCTGAATGGGGAAGCAGCTCCACCTGAAGTTCCTAAGGAAAGACCAGTTTTTATGTGGCCTGCTATGCCTCCATCCTTCAAAGATGCTGAAGATAGCTCCCTCATCCAGGGAACTCTCACTCCTTTCACTGAGATCACTGGAAGATGA 1107 0.4517 MEGPEDAYPRIEDQIKYSSMAPKKFRLRELTKATGGFSLQNKLGQGGFGTVYKGLLENKEVAVKRVSKNSRQGKQEFLAEVTTIGSLHHRNLVKLTGWCYENRELLLVYEFMPNGSLDKYLFGDKDCGYNYDFEGGYSITLDWETRRRVIYGVAQALDYLHDGCERRVLHRDIKGSNIMLDSDYNAKLGDFGLARTIQQRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKRPGNVYSQDDYKNSIVYWVWDLYGKGKVVGAVDVRLKKEEIKEEEVDCVLVLGLACCHPNPHKRPSMRTVLQVLNGEAAPPEVPKERPVFMWPAMPPSFKDAEDSSLIQGTLTPFTEITGR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4676g00001 368 Gene3D Phosphorylase Kinase; domain 1 22 111 - -
Vium4676g00001 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vium4676g00001 368 FunFam probable L-type lectin-domain containing receptor kinase S.5 112 327 - -
Vium4676g00001 368 CDD STKc_IRAK 43 323 - -
Vium4676g00001 368 SUPERFAMILY Protein kinase-like (PK-like) 18 321 IPR011009 -
Vium4676g00001 368 FunFam Probable L-type lectin-domain containing receptor kinase S.5 22 111 - -
Vium4676g00001 368 SMART serkin_6 37 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4676g00001 368 ProSiteProfiles Protein kinase domain profile. 37 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4676g00001 368 Pfam Protein kinase domain 38 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4676g00001 368 PANTHER - 18 331 - -
Vium4676g00001 368 ProSitePatterns Protein kinases ATP-binding region signature. 43 64 IPR017441 GO:0005524
Vium4676g00001 368 Gene3D Transferase(Phosphotransferase) domain 1 112 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4676g00001 Vium-Chr4676 13463 15736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4676g00001 8 335 Receptor kinase-like Gene Family AT3G53380 49.112 2.01e-98 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium4676g00001 Pkinase 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4676g00001 - - vum:124838792 760.755