Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4675g00001 ATGGAGAAGAATGATTTTACAAAGAAGGGTGAAATGCCAATGAATCTCAACATTGAGGACAAGCATACGATAGAATCCACTGACTCCAAAGCTCCAACAACACCTAAGCAACCTTTTTTCATTGGTGTTGCTGGTGGAACTGCATCTGGAAAAACAACTGTTTGTAATATGATAAATACCCAACTTCGTGATCAACGTGTTGTCCTCATTAGCCAAGATTCGTTTTATTACCCACTGAGTGATCAGACACTGCAAAAGGTTAATGAGTATAATTTTGATCATCCTGATGCCTTTGATACGAAGCTTTTGCTCTCAACAATGGAGAAATTAAAATGTGGACAACATGTTGATATACCTAATTATGATTCCAAAAACCATAAGAGAATTGAATCTGCACGTCAGGTTCATCCTGGAGATATCATAATCTTAGAAGGAATATTAGTTCTTCATGACTCAGGTGTTCGTAATCTTTTGAACATGAAGATCTTTGTTGACGAAGATTCTGATGTTCGGCTTTCAAGAAGAATGCAACGTCTTGCTATTGATCGTGGAAGGAATGTTGAAAATGTGCTAGATCAATATTCAAAATTTGTAAAGCCTAGCTTTGAAGATTTTGTGCTGCCAACAAAAAAATATGCTGATATT 645 0.3628 MEKNDFTKKGEMPMNLNIEDKHTIESTDSKAPTTPKQPFFIGVAGGTASGKTTVCNMINTQLRDQRVVLISQDSFYYPLSDQTLQKVNEYNFDHPDAFDTKLLLSTMEKLKCGQHVDIPNYDSKNHKRIESARQVHPGDIIILEGILVLHDSGVRNLLNMKIFVDEDSDVRLSRRMQRLAIDRGRNVENVLDQYSKFVKPSFEDFVLPTKKYADI 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4675g00001 215 CDD UMPK 40 215 IPR000764 -
Vium4675g00001 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 215 IPR027417 -
Vium4675g00001 215 PANTHER URIDINE KINASE 28 215 - -
Vium4675g00001 215 FunFam Uridine kinase 35 215 - -
Vium4675g00001 215 PRINTS Uridine kinase signature 38 55 - -
Vium4675g00001 215 PRINTS Uridine kinase signature 183 194 - -
Vium4675g00001 215 PRINTS Uridine kinase signature 113 128 - -
Vium4675g00001 215 PRINTS Uridine kinase signature 205 215 - -
Vium4675g00001 215 PRINTS Uridine kinase signature 68 79 - -
Vium4675g00001 215 PRINTS Uridine kinase signature 169 179 - -
Vium4675g00001 215 Pfam Phosphoribulokinase / Uridine kinase family 40 215 IPR006083 GO:0005524|GO:0016301
Vium4675g00001 215 Gene3D - 36 215 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4675g00001 Vium-Chr4675 4 5812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4675g00001 32 215 PRT Gene Family AT5G40870 65.405 4.43e-83 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4675g00001 K00876 - qsa:O6P43_008877 292.352