Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4672g00002 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTAATCTGCAAGGGGCACCAGTGTATTACTATTGCCCGCCGACTTTTGAAGAGCATGAGTCTTTAACTTCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGCATCCGTGCCTGATACATTCCAGCCCCCTCCCGTACCTCTTCCTTATGACACGGTTTTGGGAGGTTCTGCATCAACAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAGCTTTAATTACTCGTGAAGATGTTGAAGAATCAAATTGTAAAGCTCAAACCAACTCCAGTCCAACATCTCCAAGGAAGGAAGAACTATCAAAACCGAATGAAAGTAAAATATTATTGATGGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGAGATTTGACCAAATGTGAACACCATTTTCACCTATCCTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGCCCTATATGTGATCAGGAGATGATATTTTGA 558 0.4104 MGGCCCSARKPNLQGAPVYYYCPPTFEEHESLTSNDGTNASLNAGFLVGLNLEASVPDTFQPPPVPLPYDTVLGGSASTTYSESGRETVSSFEALITREDVEESNCKAQTNSSPTSPRKEELSKPNESKILLMEEEDVCPICLEEYDVENPRDLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4672g00002 185 MobiDBLite consensus disorder prediction 102 126 - -
Vium4672g00002 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 184 IPR013083 -
Vium4672g00002 185 SUPERFAMILY RING/U-box 132 183 - -
Vium4672g00002 185 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Vium4672g00002 185 Pfam Ring finger domain 138 179 IPR001841 -
Vium4672g00002 185 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 184 - -
Vium4672g00002 185 SMART ring_2 139 179 IPR001841 -
Vium4672g00002 185 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 184 - -
Vium4672g00002 185 CDD RING-H2_AIRP1-like 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4672g00002 Vium-Chr4672 34417 39633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4672g00002 1 185 C3H Transcription Factor Family AT4G00335 56.452 1.39e-68 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4672g00002 - - gmx:100803758 337.806