Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4667g00004 ATGGGAGTGGAGAAGCAATTGTTGAGGCCTGGCACCGGTCCCAAGCCACTTCCTGGTCAACAAGTCACCGTTCACTGCACTGGTTTCGGGAAGAACGGCGACCTCACTCAGAAATTTTGGAGCACAAAGGATCCCGGCCAAACCCCTTTCTCCTTTAAAATCGGCCAAGGCTCTGTCATCAAAGGATGGGATGAAGGTGTGATTGGCATGCAAATTGGTGAAGTTGCTCGTCTCCGGTGCACTCCTGATTATGCTTATGGTGCTGGTGGCTTTCCTGCTTGGGGAATACAGCCCAACTCTGTTCTGGAATTTGAAATCGAAGTCCTGAGTGTGAATTGA 339 0.5044 MGVEKQLLRPGTGPKPLPGQQVTVHCTGFGKNGDLTQKFWSTKDPGQTPFSFKIGQGSVIKGWDEGVIGMQIGEVARLRCTPDYAYGAGGFPAWGIQPNSVLEFEIEVLSVN 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4667g00004 112 MobiDBLite consensus disorder prediction 1 21 - -
Vium4667g00004 112 SUPERFAMILY FKBP-like 2 111 - -
Vium4667g00004 112 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 19 112 IPR001179 GO:0003755
Vium4667g00004 112 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 15 109 IPR001179 GO:0003755
Vium4667g00004 112 Gene3D - 1 112 IPR046357 GO:0003755
Vium4667g00004 112 FunFam Peptidylprolyl isomerase 1 112 - -
Vium4667g00004 112 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4667g00004 Vium-Chr4667 12337 13555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4667g00004 2 110 Calmodulin-binding Proteins AT5G48570 41.818 1.42e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4667g00004 K01802 - gmx:100305505 223.016