Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium465g00039 ATGTTTGGCTCCACCATTGTGGTCGATCCACTCTCCTTCCGCATCCTCGCTCACTCAGAAAACACGTGCAAAATTCTCGGCATTTCTCCGTTCGATCTCTGCGGCGCCGACGCGCTCTCTCTCTTCACTCGCTCCAGTGCCCTACTCCTCGAGAAAGCCTTCAAAGCACGCGAAGTGAACCTGAAGAACCCTGTGTTGATTCAGTCTCGAACCTCCGGAGAAGCTTTCTACGGCATCCTCCACCGAATCAACGCAGGAATCGTGGTGGATTTGGAGCCAGCATCACGGACTGAGAACCCCGTACTTTCAAGCTTTGAATGTGGTGGTAGTGATGTTAAGCTTCTCTGCAACAGCGTTGTTGAAACCGTAAACGAAATGACAGGGTACGATAGGGTTATGGTGTACAAGTTTCAAGAGGATGAGCACGGAGAGGTGGTTGCAGAGAGAAAGAGGCCGGAACTGAAGCCCTACATGGGCCTACATTTTCCCGCCGGAGATATTCCAGAGGCTTCAAGGGTTTCATTTCTGCATAACAGGGTGAGGATGATTGTGGATCGTGACGCTTCTCCCGTGAGGGTGGTGCATGATGAGACTCTGGTGGAGGCTGTGTGTTTGACAGGGTCAACACTCCGTGCACCTCATGGGTGTCACGTTGAGTACATGGCTAACATGGGGTGTGTCGCTTCTTTGGTGATAAGTGTTGTTGTTGACGGTGGCGATGGTTCCATGAAACTCTGGGGACTCATTATATGCCACCATGCTTCTCCTAAGTGTCTTTCTTTTCCTCTGAGACGTGCTTGTGAGTCTCTGGTGCAGGCCTTTGGGAAAGGGTTGAAGATGGAGAAATCTTCTGCTTTGTGCTTCCGTTGA 870 0.5103 MFGSTIVVDPLSFRILAHSENTCKILGISPFDLCGADALSLFTRSSALLLEKAFKAREVNLKNPVLIQSRTSGEAFYGILHRINAGIVVDLEPASRTENPVLSSFECGGSDVKLLCNSVVETVNEMTGYDRVMVYKFQEDEHGEVVAERKRPELKPYMGLHFPAGDIPEASRVSFLHNRVRMIVDRDASPVRVVHDETLVEAVCLTGSTLRAPHGCHVEYMANMGCVASLVISVVVDGGDGSMKLWGLIICHHASPKCLSFPLRRACESLVQAFGKGLKMEKSSALCFR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium465g00039 289 PRINTS Phytochrome signature 42 64 IPR001294 GO:0006355|GO:0009584
Vium465g00039 289 PRINTS Phytochrome signature 211 232 IPR001294 GO:0006355|GO:0009584
Vium465g00039 289 Pfam PAS fold 2 94 IPR013654 GO:0006355
Vium465g00039 289 SUPERFAMILY GAF domain-like 110 276 - -
Vium465g00039 289 SUPERFAMILY PYP-like sensor domain (PAS domain) 2 95 IPR035965 -
Vium465g00039 289 Gene3D PAS domain 2 214 - -
Vium465g00039 289 ProSitePatterns Phytochrome chromophore attachment site signature. 211 220 IPR013516 -
Vium465g00039 289 Gene3D - 103 283 IPR029016 -
Vium465g00039 289 SMART gaf_1 111 284 IPR003018 GO:0005515
Vium465g00039 289 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 111 272 IPR016132 -
Vium465g00039 289 Pfam GAF domain 112 276 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium465g00039 Vium-Chr465 287496 288714 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium465g00039 2 286 Histidine Kinase Gene Family AT2G18790 54.348 2.20e-112 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium465g00039 K12121 - vum:124841726 572.392